Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02612 ATGCAAATGATTCCCAATGACCCTTTTTCACTATCCACTTCACTTGGAGTGTTTAGTAGTACTCAAGAACAAAACACAAACCCTAACCCTAAACCTAATACTCCTCCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTATCACCAAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGATTCCAAAGAGATCAAAATCTTCAACTTCACAGAAGAGGACACAATCTTCCATGGAAGCTTAGGCAGAGATCCAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAAAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGATCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAAAAGAAGTGGAAATGTGAAAAATGTTCTAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGAAAGATAGTTTCATTACACATAGAGCTTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGGATAACTTCAATTCCAACAATAAATCTAAATTTCAAGAATGAAGAAGGTAATGGTTCTATGATGGGTTCACATTATGGTTCTATGATAGGTGGAAATGGAATTCCACATCCACAATATGGATCACATCATGGATTTAATGTAGATTTCAACAACAATTCTTTGATCATGGATCAACAAAGACCAAGTTTATCACTGTGGTTGAACCAGGGGAATACTGAAATGGGACAAAGTTCTAATAATTCCCTTTTTGGTTCTTCATGTTTATCTGAGATTGTTCAAATGGGAAATACCAATAACAATAATAATGCCTTGATTTGTTCTTCTTCATCTTCATCATCATCATCATCAATGTTATCTAATTTTGGTGCAAATTCAACATCTGCTGCAAATATTTCTCTATCAAAGACTGCAGCAGCATCTGGTTCTGTTTCTGGTATACCAATGTCAGCAACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCAATCATAATAATAATGCTGCTACTGCTACTACTAATAATAATAATAACAACCCTTCCATTTCTAGTTTTGGTGTAATGACATCACCTTCATCCAATAATAGTTTTGATCATTTTTTGATGCATGGACAACAAAGTGAACAAGGAAAATTGAATATTATGGATCAAGGTCAAAATAGTAATTTGACAAGAGATTTTCTTGGTGTGAATGGAAGAAGTGGTCCTCCACCTCAGTTTCTACCACAAGAGCTAGCAAAATTTGCTTCTATTAATCAATACACAGGAAATCATCAGTGA 1395 0.3649 MQMIPNDPFSLSTSLGVFSSTQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITSIPTINLNFKNEEGNGSMMGSHYGSMIGGNGIPHPQYGSHHGFNVDFNNNSLIMDQQRPSLSLWLNQGNTEMGQSSNNSLFGSSCLSEIVQMGNTNNNNNALICSSSSSSSSSSMLSNFGANSTSAANISLSKTAAASGSVSGIPMSATALLQKAAQMGSTRSNHNNNAATATTNNNNNNPSISSFGVMTSPSSNNSFDHFLMHGQQSEQGKLNIMDQGQNSNLTRDFLGVNGRSGPPPQFLPQELAKFASINQYTGNHQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02612 464 Gene3D Classic Zinc Finger 46 121 - -
Trre2g02612 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Trre2g02612 464 SMART c2h2final6 110 140 IPR013087 -
Trre2g02612 464 SMART c2h2final6 68 90 IPR013087 -
Trre2g02612 464 SMART c2h2final6 145 165 IPR013087 -
Trre2g02612 464 MobiDBLite consensus disorder prediction 363 384 - -
Trre2g02612 464 MobiDBLite consensus disorder prediction 29 43 - -
Trre2g02612 464 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Trre2g02612 464 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Trre2g02612 464 Gene3D Classic Zinc Finger 123 202 - -
Trre2g02612 464 FunFam protein indeterminate-domain 12-like 47 116 - -
Trre2g02612 464 MobiDBLite consensus disorder prediction 1 51 - -
Trre2g02612 464 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Trre2g02612 464 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Trre2g02612 464 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g02612 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 444 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02612 Trre-Chr2 22479697 22481750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02612 1 456 IDZ Gene Family AT5G03150 46.789 3.34e-133 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02612 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02612 K25870 - gmx:100801182 525.013