Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02608 ATGGCAACTCAAGCTTCTAAGGATAATAATCACCAAGGAACTTCCACCATTGAAAATAAAGCTGATATTTCAATTCAAAAGGGAATGACATCATTTGAAATAACTGAGGAAGTTCCAAATGAACAACAAAGAACAAGACAAAACCTTACCTTAGAGACACCAAAAAAAACTCATGAAGAAGCAAAAGAAGATTTTTTGAGAATAAACATGCCACTAACTCCATCACCAAGAAGAGTGGTATTTTCTCCTTGCACAAGTCCTAGTTATTTTATTCCAACCAATGAATCCCCTAGTCCCTCTCCTTCTAGTTCTAAAACTAGATCAAATCTTAAAAAAATACTTATTCCTAAACTCAGTTTTAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCAGCTTTCCTTGCACTTGAAGGTTCGTCCGCAGTGCCACAAAAAAAGCCTTTTCTTTCGAGGACATTGTCGCGTATGAAATCTAGAGGGAGGAAAACATCTTCGTTGCCAGTATCACCGGTTCCTCGTTCAACTCCGGTGTCTGTACATGGAGGGAAAGCTTTTCCAACAATGGCTAGTGAGAAAGAACTACAATTACCAATTCATCGTTCGCGATCTGTTCCTGCATTTACAGAAGATGACACTCCTGTAGGTGGCATGTTTCGTATAGTTCGAAACATACCGCAATTGAATGAGAAAATTGCCACCACAATATCTGCAGCATCTCCAACTAGTGAAAATGTTGAAACTGAGGATGAAGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTAGGAGAAGGAGGTGATACTTTTAAATTGGAGTGTAGCTGTAAAGGTGAGCTTTCACTAGCACACAAAGAATGTGCAGTTAAATGGTTTAGTATTAAAGGTAATAGGACTTGTGATGTGTGCAAACAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCATCAAGCTAATTTGCAATCTAGCAGAGGTCACTTAGATGAATCTTCTCAATATAGGGTTTGGCAGGATGCTCCCATTCTTGTCATTGTCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGATCTGGTGCTATTGCTATGTCCCTCCCCTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTGAGGAGAAATCATGTTTGGATTTATGGAACAATGCAGTTTGGTCTGGTGGTTCTTGCTGGACATCTTCTCTATTCATTGGCTCATATGGAAGCTGTTTTGGCAATCCTACTAGCTACATTTGCTGGATTTGGAACTGTAATGTGTGGAACATGTATTCTTATGGATATCTTGAAATGGAGGAGAAGATGGCTTGCTCAGCTGAATCAACAGAATGGAGGTTCCGAAGCCGTGGTTCCGCCTGATCAATCATCTGCAACAACTCATCAAGCTCAAGTTGATCCTCAACAAATTGAGAGTAATGTGGAAAACTCTCCTAGGCAAATGAGCTGA 1521 0.3938 MATQASKDNNHQGTSTIENKADISIQKGMTSFEITEEVPNEQQRTRQNLTLETPKKTHEEAKEDFLRINMPLTPSPRRVVFSPCTSPSYFIPTNESPSPSPSSSKTRSNLKKILIPKLSFKFKNTTSEIEKAAFLALEGSSAVPQKKPFLSRTLSRMKSRGRKTSSLPVSPVPRSTPVSVHGGKAFPTMASEKELQLPIHRSRSVPAFTEDDTPVGGMFRIVRNIPQLNEKIATTISAASPTSENVETEDEGEDIPEEEAVCRICMVELGEGGDTFKLECSCKGELSLAHKECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRLHQANLQSSRGHLDESSQYRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFGLVVLAGHLLYSLAHMEAVLAILLATFAGFGTVMCGTCILMDILKWRRRWLAQLNQQNGGSEAVVPPDQSSATTHQAQVDPQQIESNVENSPRQMS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02608 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 317 IPR013083 -
Trre2g02608 506 PANTHER OS02G0165000 PROTEIN 14 472 - -
Trre2g02608 506 MobiDBLite consensus disorder prediction 155 184 - -
Trre2g02608 506 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Trre2g02608 506 SUPERFAMILY RING/U-box 258 313 - -
Trre2g02608 506 MobiDBLite consensus disorder prediction 1 50 - -
Trre2g02608 506 CDD RING_CH-C4HC3_MARCH 262 310 - -
Trre2g02608 506 MobiDBLite consensus disorder prediction 1 60 - -
Trre2g02608 506 MobiDBLite consensus disorder prediction 470 506 - -
Trre2g02608 506 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Trre2g02608 506 SMART ringv_2 261 310 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02608 Trre-Chr2 22447492 22451290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02608 247 316 C3H Transcription Factor Family AT2G37950 40.845 3.70e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02608 - - tpra:123922782 903.664