Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02603 ATGGGCAATAGTGGTTCTAACAATCGTCGGAGACACGGTGGCGGTGGAAGTGGTCGGCGAGTTCATCCTCCGGTGACTCCTCCTCCACCTCCACCTCCGCCACCGGAAGCTGCGGTTAACCAATTTGTTTACCCTGCTGGTGCTCCGCCGTATCAAAACTACCCGAATTACTATCCTCCGCCGGGAACTGTTCCGATGCCTTTGCCGGCTCCGTATGACCACCATCACCGTGTTCCGATGGACCCAATGTGGGGCCGCTATCCAGCACCGCCACCTGCACCTTATGTGGAACATCAGAAAGCGGTTACTATAAAGAATGATGTTAACATCAAGAAGGAGACACTGAGGATTGAACCTGATGAGGAAAATCCTGGCCAATTTCTTGTTACGTTTACTTTTGATGCCACTGTTTCTGGAAGCATCACGGTACTTTTCTTTGCAAAAGAAGGCGACGGTTGTGTCCTTAACTCGACTAAGGAAAATGTTCTTGCACCTGTTACTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCATCTGGAACTGGTATAAATTTTTCAATGTTCGAGGAATCCGAGTTATTGAAAGTGGGCGAGATAGACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGCGATGTGGACGGATCAAAGGAAACTCCAACATCTGGTAATAAAACAAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAAAAGGAGAAAGGAGTATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAAATATATGGTATTGGAACTTCAGTAGAGAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGTGTTATCTGCTTATCAGAACCTCGCGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGGATGTGCAAAAGTTTTAAGGTTCCAGACAAATAGATGTCCAATATGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGAACCTGCTGAATCTGAGGAGTGA 1050 0.4676 MGNSGSNNRRRHGGGGSGRRVHPPVTPPPPPPPPPEAAVNQFVYPAGAPPYQNYPNYYPPPGTVPMPLPAPYDHHHRVPMDPMWGRYPAPPPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGQFLVTFTFDATVSGSITVLFFAKEGDGCVLNSTKENVLAPVTINFQQGLGQKFRQPSGTGINFSMFEESELLKVGEIDVYPVAVKADASSGDVDGSKETPTSGNKTNTNSQITQAVFEKEKGVFRVKVVKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPAESEE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02603 349 FunFam probable E3 ubiquitin-protein ligase LOG2 274 339 - -
Trre2g02603 349 SUPERFAMILY RING/U-box 289 335 - -
Trre2g02603 349 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Trre2g02603 349 MobiDBLite consensus disorder prediction 22 39 - -
Trre2g02603 349 PANTHER MAHOGUNIN 1 339 IPR045194 GO:0061630
Trre2g02603 349 SMART ring_2 290 328 IPR001841 -
Trre2g02603 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 339 IPR013083 -
Trre2g02603 349 MobiDBLite consensus disorder prediction 1 44 - -
Trre2g02603 349 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
Trre2g02603 349 MobiDBLite consensus disorder prediction 219 233 - -
Trre2g02603 349 CDD mRING-HC-C3HC5_MGRN1-like 288 329 IPR045195 -
Trre2g02603 349 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02603 Trre-Chr2 22410709 22413877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02603 85 308 C3H Transcription Factor Family AT3G09770 63.559 1.99e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02603 - - gmx:100789032 525.013