Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02590 ATGAAACCGAGTTGCAATGGGTGTCGTGTACTTCGCAAAGGTTGTAGTGATGACTGCATCATCCGGCCTTGCCTTGAGTGGATCAAGTCCCCTGAATCTCAAGGCAACGCCACCCTCTTACTTGCCAAATTTTATGGCCGAACCGGCTTGCTCAACCTCCTTGCTAATGCTACCAATCAAAATGCCCAAGCTGTGTTCAAATCATTGTTGTACGAGGCTTCAGGTAGATTGGTGAATCCCACACATGGAGCACTAGGTTTGTTTTGGATAGGACAATGGAACCGATGTGAAGCTGCAGTTGAAGCTGTGTTGGCTGGATCAAATATTAATGATGTTACAGCTGTTGATGGACAAACATCATCAAGTACAACCATTGCTGAAAATCGTGTTCTTCCAACAACCACTGATATACGCCACGTAGCAAGAGGTACCACTTAA 438 0.4543 MKPSCNGCRVLRKGCSDDCIIRPCLEWIKSPESQGNATLLLAKFYGRTGLLNLLANATNQNAQAVFKSLLYEASGRLVNPTHGALGLFWIGQWNRCEAAVEAVLAGSNINDVTAVDGQTSSSTTIAENRVLPTTTDIRHVARGTT 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02590 145 Pfam Lateral organ boundaries (LOB) domain 4 104 IPR004883 -
Trre2g02590 145 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre2g02590 145 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 4 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02590 Trre-Chr2 22239261 22240191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02590 1 145 AS2 family AT1G68510 56.552 6.82e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre2g02590 LOB 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02590 - - mtr:25485496 222.631