Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02590 | ATGAAACCGAGTTGCAATGGGTGTCGTGTACTTCGCAAAGGTTGTAGTGATGACTGCATCATCCGGCCTTGCCTTGAGTGGATCAAGTCCCCTGAATCTCAAGGCAACGCCACCCTCTTACTTGCCAAATTTTATGGCCGAACCGGCTTGCTCAACCTCCTTGCTAATGCTACCAATCAAAATGCCCAAGCTGTGTTCAAATCATTGTTGTACGAGGCTTCAGGTAGATTGGTGAATCCCACACATGGAGCACTAGGTTTGTTTTGGATAGGACAATGGAACCGATGTGAAGCTGCAGTTGAAGCTGTGTTGGCTGGATCAAATATTAATGATGTTACAGCTGTTGATGGACAAACATCATCAAGTACAACCATTGCTGAAAATCGTGTTCTTCCAACAACCACTGATATACGCCACGTAGCAAGAGGTACCACTTAA | 438 | 0.4543 | MKPSCNGCRVLRKGCSDDCIIRPCLEWIKSPESQGNATLLLAKFYGRTGLLNLLANATNQNAQAVFKSLLYEASGRLVNPTHGALGLFWIGQWNRCEAAVEAVLAGSNINDVTAVDGQTSSSTTIAENRVLPTTTDIRHVARGTT | 145 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02590 | 145 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 104 | IPR004883 | - | |
Trre2g02590 | 145 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Trre2g02590 | 145 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 4 | 141 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02590 | Trre-Chr2 | 22239261 | 22240191 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02590 | 1 | 145 | AS2 family | AT1G68510 | 56.552 | 6.82e-53 | 165 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Trre2g02590 | LOB | 1.1e-21 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02590 | - | - | mtr:25485496 | 222.631 |