Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02584 ATGAATACATTTATGGATTCAAGGGAAAACAATAATAATAATACTAATAATAATAAGTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATATGGACCTGTTAACTTCATGAATTGTCCTAAAGTTTCACCTTTGATTCCATGCAAAGTTGTTTCTATTAAGTACATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGATTAAGCTTGTTCCTTTGAGTGGAAATGGAAATGAGGGTCAAGATTATGGCAATGATGTTGTTGTTGAAAATCAAGACAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTTCCTCGTTTGGATTACGCGGCTGATCCTCCTCTGCAGAACATTTTGGCTAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTATTGCCGGGGATTCAATTGTGTTTTTGAGGGCGGAAAACGGTGATCTTTGCGTTGGGATTCGTCGAGCAAAAAAGGGTATTGGTGGTGGACATGAGGACCCTTCAGGTTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGATGAGAAACATTAACGACAATAACAGAAACGGTTTGAACTCGAGCGCAAATATAACCGGGAGGGCAAAAGTTAGGCCAGAAGCGGTCCTCGAAGCAGTAACTCTAGCTGCGAATAAACAACCATTCGAGGTTGTTTACTACCCTCGCGCAAGTACACCTGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGACTCATCTCGAATTAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTTTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTAAGTCCATGGTTAGTTGAATTGGTAGCAAACATTCCTTCCATAAACCTTTCCCCATTCTCACAACCAAGGAAGAAATTGAGATTGTCGCCGCACCAAGATTTCCCCTTTGACAGCCAAATTCCGGTGCCGACGTTTCCAAATAATCTTCTAGGTCCGAGCAACTTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCAATATCGGATCACCACCTCAGTAAAGTTCAGTCAGGTCTATTTTCGGCAAGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTACTGTCTCTAATAACCTAATGATGCAAAAATCTAGTATGAGTGAGAATGTGTCTTGCTTATTATCTATGGCAAGTTCTACTCAGTCTTCGAAGAAATTCGATGATGAGAAAAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACTGAGCAACAGATCTCTGGTGATCGTTCATCAGATGGAAATGCCGATAAAACGAGCAACTTTTCGAATGGTTCGGGAACTCCTCTTCATCAACAAGGCTTACAAAAACACCCCTCTTGTGACAGTTTCCCGAGGTATAAGGATAACAACCAAGAAACTGAGGCGAGTTTGGAGAGTACTGATCACTGCAAAGTTTTTCTCGAATCGGAAGATGTTGGTCGGACAATTGACCTCTCTTTACTCGAGTCTTATGATGAACTGTACAGAAAGCTGGCAGAGATGTTTGACATAGATAAATATGAAAAAGTAAGTCGCGTGCTCTACCGTGATATGTCAGGTGCAGTCAAACACATTGGAGATGAACCATTCAGTAAATTTACAAGAACAGCAAGGAGGTTGACTATTCTAATGGATTCAAGAAAATAA 2070 0.4174 MNTFMDSRENNNNNTNNNKSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHAYGPVNFMNCPKVSPLIPCKVVSIKYMADPETDEVYAKIKLVPLSGNGNEGQDYGNDVVVENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGENFPLPWFTQNENQMMRNINDNNRNGLNSSANITGRAKVRPEAVLEAVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHQDFPFDSQIPVPTFPNNLLGPSNLFRCLPENTPAGMQGARHAHYGLPISDHHLSKVQSGLFSASFVPFDHAAKLPTVSNNLMMQKSSMSENVSCLLSMASSTQSSKKFDDEKKPQLVLFGQKILTEQQISGDRSSDGNADKTSNFSNGSGTPLHQQGLQKHPSCDSFPRYKDNNQETEASLESTDHCKVFLESEDVGRTIDLSLLESYDELYRKLAEMFDIDKYEKVSRVLYRDMSGAVKHIGDEPFSKFTRTARRLTILMDSRK 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02584 689 MobiDBLite consensus disorder prediction 552 588 - -
Trre2g02584 689 Gene3D - 604 689 - -
Trre2g02584 689 MobiDBLite consensus disorder prediction 552 605 - -
Trre2g02584 689 Gene3D - 127 231 IPR015300 -
Trre2g02584 689 SUPERFAMILY DNA-binding pseudobarrel domain 117 262 IPR015300 -
Trre2g02584 689 FunFam Auxin response factor 333 406 - -
Trre2g02584 689 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Trre2g02584 689 Pfam Auxin response factor 295 378 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre2g02584 689 CDD B3_DNA 128 229 IPR003340 GO:0003677
Trre2g02584 689 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Trre2g02584 689 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g02584 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre2g02584 689 SMART B3_2 129 231 IPR003340 GO:0003677
Trre2g02584 689 FunFam Auxin response factor 127 231 - -
Trre2g02584 689 MobiDBLite consensus disorder prediction 1 23 - -
Trre2g02584 689 MobiDBLite consensus disorder prediction 589 605 - -
Trre2g02584 689 ProSiteProfiles PB1 domain profile. 608 689 IPR000270 GO:0005515
Trre2g02584 689 Gene3D - 332 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02584 Trre-Chr2 22204042 22206721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02584 24 686 B3 DNA Binding Superfamily AT4G30080 55.721 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre2g02584 B3 4.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02584 - - gmx:100796522 994.186