Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02578 ATGGCTTCTGTTATATCAAGATCTGTAAGGTTTCATGATGATCTTGAGAAATTAAAAGAAGTTGAAGAAAATAACATGGAAATGATGACCTATGAGACGAGTGAACAACACAAGCGTGTAAGGGATGCAAGAAACAAGTCATCAAATGGAAGAGAACTTTCAAGAGTGTTTTCTGAAGATTATGATGCAGAAGAGATTTTAGTATTAGATCCTAGAGGACCTAGAATTTATGTTAAGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTAGAGGAGAACTTATTATAGATTCCTCAAAGATTGCTTCAAATTATATCAGTAGAGACTTTTGGTTTGATCTTGTTGCTGCTCTACCACTTCCTCAGGTACTGATTTGGGCTGTAATTCCAAATCTAAAGGGGTCAGAAATGATTGCATCAAGGCAAATATTGCGCCTTGTGTCCATTTTTCAATACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCACCAAGGCAAATGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACATGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCTTGTACCATTGAATATCCACGGTGTCGGTATCATTATCTTGATTGTCAAAGCATAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGCTTATGTGATCAGAACAGTGACTTCTTTCAATTTGGAATTTTTGCTGATGCTCTTACATTGGAAATAACTGGCTCAAAATTCTTAAGCAAATACTATTATTGTCTTTGGTGGGGATTGAGAAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCTGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTACTCATAGGAAATATGCAAACCTACCTTCAATCCACCACTATACGGCTTGAAGAGTGGAGAATAAGAAGAACAGATACAGAAAGATGGATGCATCACAGGCAACTCCCGCGTTACTTGAAGCAAAGTGTTCGACGTCATGACCAATTCAGATGGGTAGCTACTCGTGGAGTCGACGAGGAAGCTATTCTCAGAGACCTTCCTGTTGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAAATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTGAAACCAACTCTATGCACTCCAGGAACATGCATAGTTCGCGAATGCGACCCTGTCAACGAAATGCTCTTCATCGTTCGAGGACGCTTAGATTCTTGCACAACCAACGGTGGCAGAACAGGCTTCTTCAACACCTGCAGAATAGGCTCGGGTGACTTCTGCGGTGAAGAGCTTCTCCCATGGGCCTTAGATCCTCGTCCAACCGCTGTACTTCCTTCGTCAACTCGCACGGTGAAAGCCATCACCGAGGTTGAAGCTTTTGCGCTCATTGCAGAGGACTTAAAGTTTGTTGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCTTGTTTTATACAAGCGGCTTGGTTTCGGTATAAGAGAATGAAAGAGACGAATGAGGTTAAAGAAAAGGAGAATATTATGATGATGGCAACAAATGTTAAATATTATGAAAATGATGATACTCAATATTTCTCTGCACCTCTGCAAGTTCCAATGGGATCAAGTTATCCAATGTATTCTGGAAAACTTGTAGGTAATCTAAGGAGAGGTAGGAGCATGAGATATGGTTCTGAACTTGATATTCTTGGTGGATTAAGGAAGCCTATTGATCCGGATTTTAATGATGATGATGGTTAA 1953 0.3968 MASVISRSVRFHDDLEKLKEVEENNMEMMTYETSEQHKRVRDARNKSSNGRELSRVFSEDYDAEEILVLDPRGPRIYVKFQTAYIAPSSRVSGRGELIIDSSKIASNYISRDFWFDLVAALPLPQVLIWAVIPNLKGSEMIASRQILRLVSIFQYLLRLYLIYPLSSEITKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTIEYPRCRYHYLDCQSISDPNRNAWLKSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFLSKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKQSVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENIMMMATNVKYYENDDTQYFSAPLQVPMGSSYPMYSGKLVGNLRRGRSMRYGSELDILGGLRKPIDPDFNDDDG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02578 650 Gene3D Jelly Rolls 411 531 IPR014710 -
Trre2g02578 650 PRINTS EAG/ELK/ERG potassium channel family signature 326 335 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g02578 650 PRINTS EAG/ELK/ERG potassium channel family signature 308 319 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g02578 650 PRINTS EAG/ELK/ERG potassium channel family signature 376 383 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g02578 650 PRINTS EAG/ELK/ERG potassium channel family signature 76 85 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g02578 650 PRINTS EAG/ELK/ERG potassium channel family signature 193 203 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g02578 650 PRINTS EAG/ELK/ERG potassium channel family signature 282 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre2g02578 650 Gene3D Helix hairpin bin 341 404 - -
Trre2g02578 650 Pfam Ion transport protein 85 339 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre2g02578 650 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 75 581 - -
Trre2g02578 650 SMART cnmp_10 413 544 IPR000595 -
Trre2g02578 650 ProSiteProfiles cAMP/cGMP binding motif profile. 413 498 IPR000595 -
Trre2g02578 650 SUPERFAMILY cAMP-binding domain-like 343 535 IPR018490 -
Trre2g02578 650 Gene3D - 79 337 - -
Trre2g02578 650 FunFam Cyclic nucleotide-gated ion channel 1 411 529 - -
Trre2g02578 650 CDD CAP_ED 413 544 IPR000595 -
Trre2g02578 650 SUPERFAMILY Voltage-gated potassium channels 103 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02578 Trre-Chr2 22132547 22136540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02578 75 577 Ion Channels AT2G28260 69.980 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02578 K05391 - gmx:100815543 980.319