Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02578 | ATGGCTTCTGTTATATCAAGATCTGTAAGGTTTCATGATGATCTTGAGAAATTAAAAGAAGTTGAAGAAAATAACATGGAAATGATGACCTATGAGACGAGTGAACAACACAAGCGTGTAAGGGATGCAAGAAACAAGTCATCAAATGGAAGAGAACTTTCAAGAGTGTTTTCTGAAGATTATGATGCAGAAGAGATTTTAGTATTAGATCCTAGAGGACCTAGAATTTATGTTAAGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTAGAGGAGAACTTATTATAGATTCCTCAAAGATTGCTTCAAATTATATCAGTAGAGACTTTTGGTTTGATCTTGTTGCTGCTCTACCACTTCCTCAGGTACTGATTTGGGCTGTAATTCCAAATCTAAAGGGGTCAGAAATGATTGCATCAAGGCAAATATTGCGCCTTGTGTCCATTTTTCAATACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCACCAAGGCAAATGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACATGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCTTGTACCATTGAATATCCACGGTGTCGGTATCATTATCTTGATTGTCAAAGCATAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGCTTATGTGATCAGAACAGTGACTTCTTTCAATTTGGAATTTTTGCTGATGCTCTTACATTGGAAATAACTGGCTCAAAATTCTTAAGCAAATACTATTATTGTCTTTGGTGGGGATTGAGAAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCTGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTACTCATAGGAAATATGCAAACCTACCTTCAATCCACCACTATACGGCTTGAAGAGTGGAGAATAAGAAGAACAGATACAGAAAGATGGATGCATCACAGGCAACTCCCGCGTTACTTGAAGCAAAGTGTTCGACGTCATGACCAATTCAGATGGGTAGCTACTCGTGGAGTCGACGAGGAAGCTATTCTCAGAGACCTTCCTGTTGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAAATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTGAAACCAACTCTATGCACTCCAGGAACATGCATAGTTCGCGAATGCGACCCTGTCAACGAAATGCTCTTCATCGTTCGAGGACGCTTAGATTCTTGCACAACCAACGGTGGCAGAACAGGCTTCTTCAACACCTGCAGAATAGGCTCGGGTGACTTCTGCGGTGAAGAGCTTCTCCCATGGGCCTTAGATCCTCGTCCAACCGCTGTACTTCCTTCGTCAACTCGCACGGTGAAAGCCATCACCGAGGTTGAAGCTTTTGCGCTCATTGCAGAGGACTTAAAGTTTGTTGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCTTGTTTTATACAAGCGGCTTGGTTTCGGTATAAGAGAATGAAAGAGACGAATGAGGTTAAAGAAAAGGAGAATATTATGATGATGGCAACAAATGTTAAATATTATGAAAATGATGATACTCAATATTTCTCTGCACCTCTGCAAGTTCCAATGGGATCAAGTTATCCAATGTATTCTGGAAAACTTGTAGGTAATCTAAGGAGAGGTAGGAGCATGAGATATGGTTCTGAACTTGATATTCTTGGTGGATTAAGGAAGCCTATTGATCCGGATTTTAATGATGATGATGGTTAA | 1953 | 0.3968 | MASVISRSVRFHDDLEKLKEVEENNMEMMTYETSEQHKRVRDARNKSSNGRELSRVFSEDYDAEEILVLDPRGPRIYVKFQTAYIAPSSRVSGRGELIIDSSKIASNYISRDFWFDLVAALPLPQVLIWAVIPNLKGSEMIASRQILRLVSIFQYLLRLYLIYPLSSEITKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTIEYPRCRYHYLDCQSISDPNRNAWLKSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFLSKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKQSVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENIMMMATNVKYYENDDTQYFSAPLQVPMGSSYPMYSGKLVGNLRRGRSMRYGSELDILGGLRKPIDPDFNDDDG | 650 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02578 | 650 | Gene3D | Jelly Rolls | 411 | 531 | IPR014710 | - | |
Trre2g02578 | 650 | PRINTS | EAG/ELK/ERG potassium channel family signature | 326 | 335 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Trre2g02578 | 650 | PRINTS | EAG/ELK/ERG potassium channel family signature | 308 | 319 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Trre2g02578 | 650 | PRINTS | EAG/ELK/ERG potassium channel family signature | 376 | 383 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Trre2g02578 | 650 | PRINTS | EAG/ELK/ERG potassium channel family signature | 76 | 85 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Trre2g02578 | 650 | PRINTS | EAG/ELK/ERG potassium channel family signature | 193 | 203 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Trre2g02578 | 650 | PRINTS | EAG/ELK/ERG potassium channel family signature | 282 | 299 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Trre2g02578 | 650 | Gene3D | Helix hairpin bin | 341 | 404 | - | - | |
Trre2g02578 | 650 | Pfam | Ion transport protein | 85 | 339 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Trre2g02578 | 650 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 75 | 581 | - | - | |
Trre2g02578 | 650 | SMART | cnmp_10 | 413 | 544 | IPR000595 | - | |
Trre2g02578 | 650 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 413 | 498 | IPR000595 | - | |
Trre2g02578 | 650 | SUPERFAMILY | cAMP-binding domain-like | 343 | 535 | IPR018490 | - | |
Trre2g02578 | 650 | Gene3D | - | 79 | 337 | - | - | |
Trre2g02578 | 650 | FunFam | Cyclic nucleotide-gated ion channel 1 | 411 | 529 | - | - | |
Trre2g02578 | 650 | CDD | CAP_ED | 413 | 544 | IPR000595 | - | |
Trre2g02578 | 650 | SUPERFAMILY | Voltage-gated potassium channels | 103 | 335 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02578 | Trre-Chr2 | 22132547 | 22136540 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02578 | 75 | 577 | Ion Channels | AT2G28260 | 69.980 | 0.0 | 770 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02578 | K05391 | - | gmx:100815543 | 980.319 |