Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02577 | ATGTCTACCTCTGCAACTTCCTTAGCACTTCCATCTCTTTTCACAAAAAACCCTCTCTGTTCTTCCCCTCAATGTTTCTCTTCACTCCCTTCCCTTTCACTCAACCCTAATTTCAAACCATTTTCCATTTCCTCTGTTTCTCTCCGTTCAACTTTGTCTAATCGTTTCGTTTCTCGTGTCGCCGTTTCCTCTGAATTCGACCAGGAAGAAGATACCTTTGATGATGGTGATAGACGTAGTTACTCTGCAACTCAGAGGTTGTTCGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAGAACTCTGGAAATGTTGAGATGGTTGAGGTTATTTATGATAAAACTACTGGAAGAAGCAGGGGATTTGGTTTTGTGACTATGTCTTCTGCTGATGAAGCTGAAGCTGCTGCTCAGCAGTTAAATGGCTATGAAGTGGATGGAAGGCAATTGAGAGTGAATGCTGGACCACCTCCACCTCGTACCGAGAACTCTCGTTATGGTGACAATTCTCGTTTTGGTGACAGGAGTGGTCCTCCAAGGGGTGGTGGTTCTTCAGGTAGCGAAAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTAGCGAACAAGGAAAGGTTTTAGAAGCGAAAGTAATCTATGACAGGGAAAGTGGTAGATCTAGAGGCTTTGGATTTGTGACTTACGGTAGTGCTGAAGAGGTCAACAGTGCTATTCGGTCCTTAGATGGTGTGGACTTGAATGGAAGAGCCATACGGGTCGCACCGGCTGATAGTAGACCAAAGCGTGAATTTTGA | 840 | 0.4452 | MSTSATSLALPSLFTKNPLCSSPQCFSSLPSLSLNPNFKPFSISSVSLRSTLSNRFVSRVAVSSEFDQEEDTFDDGDRRSYSATQRLFVGNLPFSVDSAQLAEIFENSGNVEMVEVIYDKTTGRSRGFGFVTMSSADEAEAAAQQLNGYEVDGRQLRVNAGPPPPRTENSRYGDNSRFGDRSGPPRGGGSSGSENRVHVGNLAWGVDNLALESLFSEQGKVLEAKVIYDRESGRSRGFGFVTYGSAEEVNSAIRSLDGVDLNGRAIRVAPADSRPKREF | 279 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02577 | 279 | MobiDBLite | consensus disorder prediction | 151 | 194 | - | - | |
Trre2g02577 | 279 | Gene3D | - | 61 | 191 | IPR012677 | - | |
Trre2g02577 | 279 | Gene3D | - | 192 | 279 | IPR012677 | - | |
Trre2g02577 | 279 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 87 | 157 | IPR000504 | GO:0003723 | |
Trre2g02577 | 279 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 267 | IPR000504 | GO:0003723 | |
Trre2g02577 | 279 | SUPERFAMILY | RNA-binding domain, RBD | 193 | 277 | IPR035979 | GO:0003676 | |
Trre2g02577 | 279 | CDD | RRM2_NsCP33_like | 196 | 271 | - | - | |
Trre2g02577 | 279 | PANTHER | OS02G0815200 PROTEIN | 19 | 274 | - | - | |
Trre2g02577 | 279 | SUPERFAMILY | RNA-binding domain, RBD | 84 | 192 | IPR035979 | GO:0003676 | |
Trre2g02577 | 279 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 195 | 273 | IPR000504 | GO:0003723 | |
Trre2g02577 | 279 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 85 | 163 | IPR000504 | GO:0003723 | |
Trre2g02577 | 279 | SMART | rrm1_1 | 86 | 159 | IPR000504 | GO:0003723 | |
Trre2g02577 | 279 | SMART | rrm1_1 | 196 | 269 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02577 | Trre-Chr2 | 22128299 | 22129855 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02577 | 84 | 278 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 32.308 | 6.08e-22 | 93.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02577 | - | - | gmx:100786275 | 347.051 |