Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02571 ATGAAATGCCAAAGAGTGGAAGGATCATATGTATCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTAATGGTTTCTCTGATGCATGTGGAGGATATTTCCTGGATTTTGATTTTGCCAAAGTTGAGGTACTAGGTTCTGGTGCTAATGAAGACTCACCTTTGGAAAACTCAAATTCGGAAAGTCAATCTCCTGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTGTCTTCAGGAACAATCCAAGTCAACCATCAAATGAAGATTGTATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATTGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGGTATATTGAAGAATCTTCAAATTTAAAATCAAAGGAAAAAGTACGAACTACTGGTGCAAAAAAGAAACGACGAAGTGTGTCATGTAGTGAACTTCATACCAGAACTAAAAGATTGGAAAATATTCCTATCGAGAAGTGTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCATGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGACTTTTTCCTCGGAGGCCTCGGAGGAGTCTGAGGATGAAGAATTGACGCCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTTTGCGAGCCAGTTCTTCACAGAAGTTCAACATGAAAGAGGGCGAACAAAATGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATCTGTTAGCCAAGTTGGTTCTTCTGACATTGCTAATCAAAGCAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1389 0.3952 MKCQRVEGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPNGFSDACGGYFLDFDFAKVEVLGSGANEDSPLENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGVFRNNPSQPSNEDCMYNISLDIQHLHELNNGYPLAGGILSCKKENVTVENCQSAPPREKRFRKPTQRYIEESSNLKSKEKVRTTGAKKKRRSVSCSELHTRTKRLENIPIEKCSDSDSDVTLYELQHCMKYPKKEKLEYDDETFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRASSSQKFNMKEGEQNDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSSVSQVGSSDIANQSNGSSISLGRRNVRRKKCT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02571 462 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 433 - -
Trre2g02571 462 MobiDBLite consensus disorder prediction 103 140 - -
Trre2g02571 462 Pfam Myb-like DNA-binding domain 333 380 IPR001005 -
Trre2g02571 462 MobiDBLite consensus disorder prediction 431 452 - -
Trre2g02571 462 CDD SANT_TRF 331 381 - -
Trre2g02571 462 MobiDBLite consensus disorder prediction 313 328 - -
Trre2g02571 462 ProSiteProfiles Myb-like domain profile. 325 380 IPR001005 -
Trre2g02571 462 MobiDBLite consensus disorder prediction 419 462 - -
Trre2g02571 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 325 384 IPR017930 -
Trre2g02571 462 MobiDBLite consensus disorder prediction 300 328 - -
Trre2g02571 462 SMART sant 329 382 IPR001005 -
Trre2g02571 462 Gene3D - 319 432 - -
Trre2g02571 462 SUPERFAMILY Homeodomain-like 327 387 IPR009057 -
Trre2g02571 462 MobiDBLite consensus disorder prediction 104 140 - -
Trre2g02571 462 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02571 Trre-Chr2 22049022 22053072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02571 329 386 Single Myb Histone (SMH) Gene Family AT1G17520 39.344 7.89e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g02571 Myb_DNA-binding 3.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02571 - - aprc:113871152 484.182