Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02570 ATGAAATGCCAAAGAATTCAGGTGGAAGGATCATATGTATCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTAATGGTTTCTCTGATGCATGTGGAGGATATTTCCTGGATTTTGATTTTGCCAAAGTTGAGGTACTAGGTTCTGGTGCTAATGAAGACTCACCTTTGGAAAACTCAAATTCGGAAAGTCAATCTCCTGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTGTCTTCAGGAACAATCCAAGTCAACCATCAAATGAAGATTGTATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATTGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGGTATATTGAAGAATCTTCAAATTTAAAATCAAAGGAAAAAGTACGAACTACTGGTGCAAAAAAGAAACGACGAAGTGTGTCATGTAGTGAACTTCATACCAGAACTAAAAGATTGGAAAATATTCCTATCGAGAAGTGTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCATGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGACTTTTTCCTCGGAGGCCTCGGAGGAGTCTGAGGATGAAGAATTGACGCCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTTTGCGAGCCAGTTCTTCACAGAAGTTCAACATGAAAGAGGGCGAACAAAATGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATCTGTTAGCCAAGTTGGTTCTTCTGACATTGCTAATCAAAGCAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1395 0.395 MKCQRIQVEGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPNGFSDACGGYFLDFDFAKVEVLGSGANEDSPLENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGVFRNNPSQPSNEDCMYNISLDIQHLHELNNGYPLAGGILSCKKENVTVENCQSAPPREKRFRKPTQRYIEESSNLKSKEKVRTTGAKKKRRSVSCSELHTRTKRLENIPIEKCSDSDSDVTLYELQHCMKYPKKEKLEYDDETFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRASSSQKFNMKEGEQNDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSSVSQVGSSDIANQSNGSSISLGRRNVRRKKCT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02570 464 MobiDBLite consensus disorder prediction 302 330 - -
Trre2g02570 464 Gene3D - 321 434 - -
Trre2g02570 464 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 435 - -
Trre2g02570 464 MobiDBLite consensus disorder prediction 105 143 - -
Trre2g02570 464 MobiDBLite consensus disorder prediction 231 256 - -
Trre2g02570 464 MobiDBLite consensus disorder prediction 433 454 - -
Trre2g02570 464 CDD SANT_TRF 333 383 - -
Trre2g02570 464 MobiDBLite consensus disorder prediction 315 330 - -
Trre2g02570 464 Pfam Myb-like DNA-binding domain 335 382 IPR001005 -
Trre2g02570 464 SMART sant 331 384 IPR001005 -
Trre2g02570 464 MobiDBLite consensus disorder prediction 106 143 - -
Trre2g02570 464 SUPERFAMILY Homeodomain-like 329 389 IPR009057 -
Trre2g02570 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 386 IPR017930 -
Trre2g02570 464 MobiDBLite consensus disorder prediction 421 464 - -
Trre2g02570 464 ProSiteProfiles Myb-like domain profile. 327 382 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02570 Trre-Chr2 22049022 22053072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02570 331 388 Single Myb Histone (SMH) Gene Family AT1G17520 39.344 7.53e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g02570 Myb_DNA-binding 3.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02570 - - aprc:113871152 486.878