Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02569 ATGGATCGGGAAGAATATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAATTCAGGTGGAAGGATCATATGTATCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAACGATCATGTTTCATTGGATGGCAGTTTAGCTTCTCATACAGCTTTGAATGACAAGGATGATTTGGAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACGATTTTGAAGGACCTAATGGTTTCTCTGATGCATGTGGAGGATATTTCCTGGATTTTGATTTTGCCAAAGTTGAGGTACTAGGTTCTGGTGCTAATGAAGACTCACCTTTGGAAAACTCAAATTCGGAAAGTCAATCTCCTGGAGTTAGTGGAAGTAGCACTGTTGGTGGAATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGTCACCCATGATACAAATGGTGTCTTCAGGAACAATCCAAGTCAACCATCAAATGAAGATTGTATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAATAATGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATTGCCAATCTGCACCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGAACTAAAAGATTGGAAAATATTCCTATCGAGAAGTGTAGTGATTCTGATAGTGATGTGACACTTTATGAGTTACAACACTGCATGAAGTATCCAAAGAAAGAGAAACTAGAGTATGACGATGAGACTTTTTCCTCGGAGGCCTCGGAGGAGTCTGAGGATGAAGAATTGACGCCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAGCCTCTGAAGTGACAAAGTTGATGGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTTTGCGAGCCAGTTCTTCACAGAAGTTCAACATGAAAGAGGGCGAACAAAATGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATCCATCCATACCCAAAGCGACGAAACAAAAAGAGATCATCTGTTAGCCAAGTTGGTTCTTCTGACATTGCTAATCAAAGCAATGGTTCTTCTATTAGTCTTGGCAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1329 0.4003 MDREEYLRKCSNMKCQRIQVEGSYVSSLQDDEMEVEHLFEEPRNDHVSLDGSLASHTALNDKDDLELEVLDDFLDDGFLDDVEIDDFEGPNGFSDACGGYFLDFDFAKVEVLGSGANEDSPLENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETVTHDTNGVFRNNPSQPSNEDCMYNISLDIQHLHELNNGYPLAGGILSCKKENVTVENCQSAPPREKRFRKPTQRTKRLENIPIEKCSDSDSDVTLYELQHCMKYPKKEKLEYDDETFSSEASEESEDEELTPKRCRTKDRRKNQRMWTASEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRASSSQKFNMKEGEQNDENSPRTLPLSVASRVLELSKIHPYPKRRNKKRSSVSQVGSSDIANQSNGSSISLGRRNVRRKKCT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02569 442 SMART sant 309 362 IPR001005 -
Trre2g02569 442 MobiDBLite consensus disorder prediction 117 155 - -
Trre2g02569 442 MobiDBLite consensus disorder prediction 411 432 - -
Trre2g02569 442 CDD SANT_TRF 311 361 - -
Trre2g02569 442 MobiDBLite consensus disorder prediction 293 309 - -
Trre2g02569 442 Pfam Myb-like DNA-binding domain 313 360 IPR001005 -
Trre2g02569 442 MobiDBLite consensus disorder prediction 399 442 - -
Trre2g02569 442 MobiDBLite consensus disorder prediction 118 155 - -
Trre2g02569 442 SUPERFAMILY Homeodomain-like 307 367 IPR009057 -
Trre2g02569 442 MobiDBLite consensus disorder prediction 280 309 - -
Trre2g02569 442 ProSiteProfiles Myb-like domain profile. 305 360 IPR001005 -
Trre2g02569 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 305 364 IPR017930 -
Trre2g02569 442 Gene3D - 299 412 - -
Trre2g02569 442 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02569 Trre-Chr2 22048986 22053072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02569 309 366 Single Myb Histone (SMH) Gene Family AT1G17520 39.344 7.26e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g02569 Myb_DNA-binding 3.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02569 - - gmx:100810255 456.447