Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02567 | ATGAATTGTTTTCCGTTCAACATCTACTACGGAGAAAAGAAAGGTGATGCTAAAGGCTTGCAAATGCAATCACTATCGGGTTTATCGAACAACTCTACTTATGGTGGGAGTGAGGTGAGAAGAACTGGTTCTGACTTGAATTCTCTCGACGCCTCAGACAATAGCACAGACTCCCTCAGGAGGAATGCATTTCCCAATTTGTCCCAAAGACCCAGCAACCTGAGAGTATTTACTGTATCTGAGCTGAAATCAGCCACCAAGAATTTTGGTCGATCTGTTATGCTAGGTGAGGGTGGATTCGGGTGTGTCTACAAGGGATTGATCAAGAGTTCAGATGACCCACCTAGTAAAATTGAAGTTGCAGTTAAACAACTTGGCAAAAGAGGAATTCAGGGGCATAAGGAATGGGTAACTGAAGTGAATGTTCTAGGTATTGTTGAGCATCACAATCTTGTGAAGCTAGTGGGCTATTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTTTGATATATGAATATATGCCCAACGGAAGCGTGGAACACCATTTATCGCCACGATCAGAAACTCCTCTCTCATGGAGTAGGAGACTGAAAATAGCCCAAGATGCTGCTCGTGGCTTAACATATCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCGAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTCGGATTAGCAAGATTGGGACCATCCGATGGGTTAACTCACGTTTCAACAGCGGTTGTAGGAACAATGGGGTATGCTGCTCCCGAATATATTCAAACTGGACGTCTCACTTCAAAGAGTGATGTATGGAGCTACGGCGTTTTCCTCTATGAACTCATTACTGGCAGGCGGCCTTTAGATCGAAATCGTCCCAAGAGCGAACAAAAGCTGTTGGAATGGATAAGGCCATACCTTTCAGACGTGAAGAAATTTCAACTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTCAAAGTCGGCCCAAAAACTTGCTTTAGTAGCCAACCGATGCTTGGTCAGAAACCCTAAAAATCGCCCGAAGATGAGTGAAGTATTAGAAATGATTGATCGGATTGTCGAATCTTCGTTTAGTGCTAATCCACAACCACCCTTGAATAGTGTAGCCTCAGCCGGTGATTCTCATGACACTGAAATAAAGAACAAGAAACGGATCATGGATCCAAAACCAGATTGTAATTGGTTTAGGATGTGGAGACCAAAGCTTTTAAGAACATGCTGA | 1284 | 0.4315 | MNCFPFNIYYGEKKGDAKGLQMQSLSGLSNNSTYGGSEVRRTGSDLNSLDASDNSTDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSSDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHHNLVKLVGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRSETPLSWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKSEQKLLEWIRPYLSDVKKFQLILDPRLERKHLSKSAQKLALVANRCLVRNPKNRPKMSEVLEMIDRIVESSFSANPQPPLNSVASAGDSHDTEIKNKKRIMDPKPDCNWFRMWRPKLLRTC | 427 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02567 | 427 | ProSitePatterns | Protein kinases ATP-binding region signature. | 95 | 123 | IPR017441 | GO:0005524 | |
Trre2g02567 | 427 | MobiDBLite | consensus disorder prediction | 378 | 395 | - | - | |
Trre2g02567 | 427 | PANTHER | OS01G0588500 PROTEIN-RELATED | 58 | 372 | - | - | |
Trre2g02567 | 427 | MobiDBLite | consensus disorder prediction | 30 | 57 | - | - | |
Trre2g02567 | 427 | Pfam | Protein tyrosine and serine/threonine kinase | 94 | 369 | IPR001245 | GO:0004672|GO:0006468 | |
Trre2g02567 | 427 | CDD | STKc_IRAK | 95 | 373 | - | - | |
Trre2g02567 | 427 | SUPERFAMILY | Protein kinase-like (PK-like) | 66 | 370 | IPR011009 | - | |
Trre2g02567 | 427 | FunFam | Serine/threonine-protein kinase BIK1 | 56 | 174 | - | - | |
Trre2g02567 | 427 | ProSiteProfiles | Protein kinase domain profile. | 89 | 374 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g02567 | 427 | FunFam | Serine/threonine-protein kinase PCRK2 | 175 | 383 | - | - | |
Trre2g02567 | 427 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 384 | - | - | |
Trre2g02567 | 427 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 174 | - | - | |
Trre2g02567 | 427 | MobiDBLite | consensus disorder prediction | 378 | 397 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02567 | Trre-Chr2 | 22002350 | 22004666 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02567 | 1 | 370 | Glycoside Hydrolase | AT3G07070 | 44.000 | 7.28e-94 | 287 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Trre2g02567 | PK_Tyr_Ser-Thr | 4.1e-49 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02567 | - | - | gmx:100305438 | 707.983 |