Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02567 ATGAATTGTTTTCCGTTCAACATCTACTACGGAGAAAAGAAAGGTGATGCTAAAGGCTTGCAAATGCAATCACTATCGGGTTTATCGAACAACTCTACTTATGGTGGGAGTGAGGTGAGAAGAACTGGTTCTGACTTGAATTCTCTCGACGCCTCAGACAATAGCACAGACTCCCTCAGGAGGAATGCATTTCCCAATTTGTCCCAAAGACCCAGCAACCTGAGAGTATTTACTGTATCTGAGCTGAAATCAGCCACCAAGAATTTTGGTCGATCTGTTATGCTAGGTGAGGGTGGATTCGGGTGTGTCTACAAGGGATTGATCAAGAGTTCAGATGACCCACCTAGTAAAATTGAAGTTGCAGTTAAACAACTTGGCAAAAGAGGAATTCAGGGGCATAAGGAATGGGTAACTGAAGTGAATGTTCTAGGTATTGTTGAGCATCACAATCTTGTGAAGCTAGTGGGCTATTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTTTGATATATGAATATATGCCCAACGGAAGCGTGGAACACCATTTATCGCCACGATCAGAAACTCCTCTCTCATGGAGTAGGAGACTGAAAATAGCCCAAGATGCTGCTCGTGGCTTAACATATCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCGAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTCGGATTAGCAAGATTGGGACCATCCGATGGGTTAACTCACGTTTCAACAGCGGTTGTAGGAACAATGGGGTATGCTGCTCCCGAATATATTCAAACTGGACGTCTCACTTCAAAGAGTGATGTATGGAGCTACGGCGTTTTCCTCTATGAACTCATTACTGGCAGGCGGCCTTTAGATCGAAATCGTCCCAAGAGCGAACAAAAGCTGTTGGAATGGATAAGGCCATACCTTTCAGACGTGAAGAAATTTCAACTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTCAAAGTCGGCCCAAAAACTTGCTTTAGTAGCCAACCGATGCTTGGTCAGAAACCCTAAAAATCGCCCGAAGATGAGTGAAGTATTAGAAATGATTGATCGGATTGTCGAATCTTCGTTTAGTGCTAATCCACAACCACCCTTGAATAGTGTAGCCTCAGCCGGTGATTCTCATGACACTGAAATAAAGAACAAGAAACGGATCATGGATCCAAAACCAGATTGTAATTGGTTTAGGATGTGGAGACCAAAGCTTTTAAGAACATGCTGA 1284 0.4315 MNCFPFNIYYGEKKGDAKGLQMQSLSGLSNNSTYGGSEVRRTGSDLNSLDASDNSTDSLRRNAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSSDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHHNLVKLVGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRSETPLSWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKSEQKLLEWIRPYLSDVKKFQLILDPRLERKHLSKSAQKLALVANRCLVRNPKNRPKMSEVLEMIDRIVESSFSANPQPPLNSVASAGDSHDTEIKNKKRIMDPKPDCNWFRMWRPKLLRTC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02567 427 ProSitePatterns Protein kinases ATP-binding region signature. 95 123 IPR017441 GO:0005524
Trre2g02567 427 MobiDBLite consensus disorder prediction 378 395 - -
Trre2g02567 427 PANTHER OS01G0588500 PROTEIN-RELATED 58 372 - -
Trre2g02567 427 MobiDBLite consensus disorder prediction 30 57 - -
Trre2g02567 427 Pfam Protein tyrosine and serine/threonine kinase 94 369 IPR001245 GO:0004672|GO:0006468
Trre2g02567 427 CDD STKc_IRAK 95 373 - -
Trre2g02567 427 SUPERFAMILY Protein kinase-like (PK-like) 66 370 IPR011009 -
Trre2g02567 427 FunFam Serine/threonine-protein kinase BIK1 56 174 - -
Trre2g02567 427 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02567 427 FunFam Serine/threonine-protein kinase PCRK2 175 383 - -
Trre2g02567 427 Gene3D Transferase(Phosphotransferase) domain 1 175 384 - -
Trre2g02567 427 Gene3D Phosphorylase Kinase; domain 1 62 174 - -
Trre2g02567 427 MobiDBLite consensus disorder prediction 378 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02567 Trre-Chr2 22002350 22004666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02567 1 370 Glycoside Hydrolase AT3G07070 44.000 7.28e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre2g02567 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02567 - - gmx:100305438 707.983