Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02555 ATGGTTCTTTCTTTTGTTGAGAAGATACAAAAAGGTATCTCACATTTTGTACACAAAAGACATGATTTCAGTGAAGAGCTGGTTCCAGAGGATGTAAGGGAAGGATATTTTGCTGTTGTTGCAATGAAGGATGGTGAAATGAAAAGGTTTATCATTGGTTTAGAGTACTTGAGTGATCCTGAATTTTTGGGACTACTTGATCAAGCTAAGGAAGAGTATGGTTTCATGCACAAAGGAGCTATTGCTGTTCCTTGTCAGCCTCAACAATTACAGAACATTATAGATGGTCAGAGATGA 297 0.3737 MVLSFVEKIQKGISHFVHKRHDFSEELVPEDVREGYFAVVAMKDGEMKRFIIGLEYLSDPEFLGLLDQAKEEYGFMHKGAIAVPCQPQQLQNIIDGQR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02555 98 Pfam Auxin responsive protein 26 94 IPR003676 GO:0009733
Trre2g02555 98 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 22 92 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02555 Trre-Chr2 21878660 21878956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02555 29 86 Calmodulin-binding Proteins AT3G43120 48.276 4.24e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02555 - K14488 gmx:100775971 134.035