Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02550 ATGCTTAGTTCTTTTTTTACGAAGGTACAAAAGAGTTTATCAGTCTTTGTACCAAAAAAGCATGCATTGAAGTATTGGAAAGAAGATCATGCCACAGCTACAACTGAGCTTGCCGATGATGTTATAAAAGGTTGCTTTGCTGTTATGGCAAGGAAGGGTGAGGAAACTAGAAGATTTATTGTTGGGTTAGATTACTTAACTGATCCTACTTTTTTGGGATTGCTTGATGAAGCTTGTGAGGAATTTGGTTTCCAACAGAAAGGAACTCTCGTTGTTCCATGTCGGCCGATAGAATTACAGAACATTTTAGATGGTCGGAAAACAGAGAGAAGAAGACTGCGCCCAAATTAA 351 0.3846 MLSSFFTKVQKSLSVFVPKKHALKYWKEDHATATTELADDVIKGCFAVMARKGEETRRFIVGLDYLTDPTFLGLLDEACEEFGFQQKGTLVVPCRPIELQNILDGRKTERRRLRPN 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02550 116 Pfam Auxin responsive protein 32 103 IPR003676 GO:0009733
Trre2g02550 116 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02550 Trre-Chr2 21828343 21828693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02550 34 94 Calmodulin-binding Proteins AT5G20810 47.541 7.02e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02550 - K14488 tpra:123895443 190.66