Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02538 ATGACGTATTCCTCACCCAGACAGCCCATCCACCTTCCAACTGATCCCAACCTCTCCCTAACCTCCTTCCTCTTCCAATCCACTTCTTCCCTCGCCGACACCATCGCCATCGCCAACGCTCACTCTGGCGACTCCCTAACCTTCCGCCAACTCAAAATCCAAGTCTCTTCCCTCTCTCAATCCTTGCTCCGTATCGGAATTCGACAAGGCGATATCATTTTGCTATTTGCACCTAATTCCATACGTTTCTCCGTTTGTTTCCTTGCTATAGTCGCCATAGGTGCTATTGTCACCACCTGTAGTCCTTTATACACCGTCTCCGAACTCTCCAAGCAAATTCAAGACTCCAAACCAAAGCTTGTTGTAACTGTTTCGGAGCTTTTCAACAAAATAGAAGAATTGAATATTGATTTACCTTTCGTATTGCTCAACGATTCTTTGAACAAGTTCGGTTCTAGGTTTTTGAACTATGATGATCTGACCGGAGATTCGTACAATAGCTCCGACGAGATTACGGAGAACAGTGTTGTTTCGCAATCCGACGTGGCGGTAATTCTGTACTCTTCAGGTACCACAGGGAGAAGTAAGGGAGTGATGTTGACTCACCGGAATTTCATAGCGACGGCGGTGGCAGGAGTGGCGGATCAAGACCGTTACGGCGAGGGGAAGAACGTGTTCCTGTGTTTTGTGCCGATGTATCACGTGATGGGATTGGCGGTTATAACGTACACACAGTTGAGGAGAGGGAACACGGTGGTGTCGATGGGGAGATTTGATCTGGAGAAGACTTTAGCGGCCGTGGAGAAGTTTAGGGTGACGCATTTGTATGTTGCTCCGCCGGTGATGGTGGAGCTGATCAAGAGGCGTGACATTGTGAGTGGTTATGATTTGTCGTCGTTGAAGCAACTTGCCGGCGGTGCTGCTCCGTTGGGGAAAGATGTGATGCAAGAGTGTGCTAAGATTCTTCCCCAAGTTGAAATCATTCAGGGGTATGGCATGACTGAAGCATGTGGACTTATTTCCTGTGAAAATCCAAAGGAACTGGAAGGAAACTTTCTTTCAGGTTCAACTGGAACATTAGTTCCAAGTTTAGAATCCCGAATTGTTAGTTTGGAAACATTGAATCCCCTCCCACCCAATCAATTAGGGGAAATTTGGCTAAGAGGACCCACTATGATGAAAGGATACTTTAACAATCCAGAAGCAACAAAACAGACCATTAATGATGAGGGTTGGATGATTACAGGTGATCTTGGTTATTTTGATGAAAATGGACAGTTATTTGTTGTGGATCGAATTAAAGAGCTCATCAAGTGTAACGGGTATCAAGTGGCACCAGCTGAACTTGAAGATTTACTAATTTCTCACCCTGAAATTTCTGATGCTGGTGTGATCCCATCCCCTGATGCCAAAGCCGGTGAGGTTCCGGTGGCTTATGTTGTTCGCTCACCCAATAGCTCGATAACCGGAGAAGACATTCAAAAGTTTGTAGCAAAACAGGTTGCACCATACAAAAGATTGCGAAGAGTGAATTTTATAGACAAGATTCCAAAGTTACCCACAGGAAAGATCTTAAGAAAGGATCTCGTAAGTCTTGATCGACAAATAAAATCAAAGTTATAG 1623 0.451 MTYSSPRQPIHLPTDPNLSLTSFLFQSTSSLADTIAIANAHSGDSLTFRQLKIQVSSLSQSLLRIGIRQGDIILLFAPNSIRFSVCFLAIVAIGAIVTTCSPLYTVSELSKQIQDSKPKLVVTVSELFNKIEELNIDLPFVLLNDSLNKFGSRFLNYDDLTGDSYNSSDEITENSVVSQSDVAVILYSSGTTGRSKGVMLTHRNFIATAVAGVADQDRYGEGKNVFLCFVPMYHVMGLAVITYTQLRRGNTVVSMGRFDLEKTLAAVEKFRVTHLYVAPPVMVELIKRRDIVSGYDLSSLKQLAGGAAPLGKDVMQECAKILPQVEIIQGYGMTEACGLISCENPKELEGNFLSGSTGTLVPSLESRIVSLETLNPLPPNQLGEIWLRGPTMMKGYFNNPEATKQTINDEGWMITGDLGYFDENGQLFVVDRIKELIKCNGYQVAPAELEDLLISHPEISDAGVIPSPDAKAGEVPVAYVVRSPNSSITGEDIQKFVAKQVAPYKRLRRVNFIDKIPKLPTGKILRKDLVSLDRQIKSKL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02538 540 Gene3D - 3 434 IPR042099 -
Trre2g02538 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 4 434 - -
Trre2g02538 540 CDD 4CL 12 529 - -
Trre2g02538 540 Gene3D - 435 537 IPR045851 -
Trre2g02538 540 FunFam 4-coumarate--CoA ligase 2 435 535 - -
Trre2g02538 540 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Trre2g02538 540 Pfam AMP-binding enzyme 32 439 IPR000873 -
Trre2g02538 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 530 - -
Trre2g02538 540 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Trre2g02538 540 SUPERFAMILY Acetyl-CoA synthetase-like 16 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02538 Trre-Chr2 21692343 21697538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02538 3 540 Monolignol Biosynthesis Gene Families AT4G05160 57.798 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02538 K01904 - psat:127097095 855.899