Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02517 ATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTTTAGAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGCTATCAATATCAACCAAAGATTTTTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAGATTGGGCCAATAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGACAAAATGCAATAGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTTAAAACCATTGATGGCCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCCGGAAACACTAATGTGCGGTCGAGTCCAGAACACTACGGATATCGAACATTATCCGATGGAGATGGAATCTCAATATTTGGATCAAGAGACATATGGATCGATCATTGCACACTCTCCCGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCAACGGCGATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCATAGTGACCACTACAAACCAGATTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGAGAACAGTTAGTTCAGAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTCAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAATCGATATACGGCTCCTGAGAATGTTGGTGCGAAACAAGTTACAAAGAGGTTGGATACGGGTGAAGGGGAATGGACTTCGTGGAATTGGAGATCAGAAGGCGATGTTATGGCGAATGGTGCATTTTTTGTTGATTCAGGTGGTGAGAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTAATCCTAAAGCTGTTGATCGGATTTCAGTTCTTACTATGACTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCACCAAATGGTGGTGGTGATTATAGTATTTCATATTCAGGAGGACCAGAAGAGTACACGGATGACATGTCACATAGTACAGTGCTGTTGACCTATTCTCTTACTTTGACTCTTGTTTCCATCTTTGTTGCACTCTTTTGTTTGTTGTTTCATGATGTTTCACTATAA 1374 0.3996 MLNLTLPGQHPDPESVALEVHRKVNVSMGRREMLSISTKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAIGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPENVGAKQVTKRLDTGEGEWTSWNWRSEGDVMANGAFFVDSGGESEGNFEKAYSINPKAVDRISVLTMTAGVLGVARDNNLGMWTRAPNGGGDYSISYSGGPEEYTDDMSHSTVLLTYSLTLTLVSIFVALFCLLFHDVSL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02517 457 FunFam Pectate lyase 48 390 - -
Trre2g02517 457 Gene3D - 48 390 IPR012334 -
Trre2g02517 457 SUPERFAMILY Pectin lyase-like 38 371 IPR011050 -
Trre2g02517 457 PANTHER PECTATE LYASE 18-RELATED 9 392 IPR045032 GO:0030570
Trre2g02517 457 Pfam Pectate lyase 132 300 IPR002022 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Trre2g02517 457 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Trre2g02517 457 SMART amb_all 123 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02517 Trre-Chr2 21476809 21481314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02517 1 442 Polysaccharide Lyase AT3G53190 71.875 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02517 K01728 - gmx:100815062 764.607