LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g02517	ATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTTTAGAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGCTATCAATATCAACCAAAGATTTTTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAGATTGGGCCAATAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGACAAAATGCAATAGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTTAAAACCATTGATGGCCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCCGGAAACACTAATGTGCGGTCGAGTCCAGAACACTACGGATATCGAACATTATCCGATGGAGATGGAATCTCAATATTTGGATCAAGAGACATATGGATCGATCATTGCACACTCTCCCGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCAACGGCGATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCATAGTGACCACTACAAACCAGATTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGAGAACAGTTAGTTCAGAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTCAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAATCGATATACGGCTCCTGAGAATGTTGGTGCGAAACAAGTTACAAAGAGGTTGGATACGGGTGAAGGGGAATGGACTTCGTGGAATTGGAGATCAGAAGGCGATGTTATGGCGAATGGTGCATTTTTTGTTGATTCAGGTGGTGAGAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTAATCCTAAAGCTGTTGATCGGATTTCAGTTCTTACTATGACTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCACCAAATGGTGGTGGTGATTATAGTATTTCATATTCAGGAGGACCAGAAGAGTACACGGATGACATGTCACATAGTACAGTGCTGTTGACCTATTCTCTTACTTTGACTCTTGTTTCCATCTTTGTTGCACTCTTTTGTTTGTTGTTTCATGATGTTTCACTATAA	1374	0.3996	MLNLTLPGQHPDPESVALEVHRKVNVSMGRREMLSISTKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAIGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPENVGAKQVTKRLDTGEGEWTSWNWRSEGDVMANGAFFVDSGGESEGNFEKAYSINPKAVDRISVLTMTAGVLGVARDNNLGMWTRAPNGGGDYSISYSGGPEEYTDDMSHSTVLLTYSLTLTLVSIFVALFCLLFHDVSL	457

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g02517	457	FunFam	Pectate lyase	48	390	-	-
	Trre2g02517	457	Gene3D	-	48	390	IPR012334	-
	Trre2g02517	457	SUPERFAMILY	Pectin lyase-like	38	371	IPR011050	-
	Trre2g02517	457	PANTHER	PECTATE LYASE 18-RELATED	9	392	IPR045032	GO:0030570
	Trre2g02517	457	Pfam	Pectate lyase	132	300	IPR002022	-
	Trre2g02517	457	PRINTS	Pollen allergen Amb family signature	275	294	IPR018082	-
	Trre2g02517	457	PRINTS	Pollen allergen Amb family signature	339	363	IPR018082	-
	Trre2g02517	457	PRINTS	Pollen allergen Amb family signature	71	88	IPR018082	-
	Trre2g02517	457	PRINTS	Pollen allergen Amb family signature	297	316	IPR018082	-
	Trre2g02517	457	PRINTS	Pollen allergen Amb family signature	195	216	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g02517	Trre-Chr2	21476809	21481314	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g02517	1	442	Polysaccharide Lyase	AT3G53190	71.875	0.0	635

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g02517	K01728		-	gmx:100815062	764.607

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