Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02516 ATGACCCAAACAACCAGCATTTTCCTAATTACATTTCTTTCTTCATTTTTCACCCATGGAACATCAATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTTTAGAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGCTATCAATATCAACCAAAGATTTTTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAGATTGGGCCAATAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGACAAAATGCAATAGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTTAGATATGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTTAAAACCATTGATGGCCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATTACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCCGGAAACACTAATGTGCGGTCGAGTCCAGAACACTACGGATATCGAACATTATCCGATGGAGATGGAATCTCAATATTTGGATCAAGAGACATATGGATCGATCATTGCACACTCTCCCGTTGCAAAGACGGTTTAATAGACGCCGTTATGGGTTCAACGGCGATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGTCATAGTGACCACTACAAACCAGATTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGAGAACAGTTAGTTCAGAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTCAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAATCGATATACGGCTCCTGAGAATGTTGGTGCGAAACAAGTTACAAAGAGGTTGGATACGGGTGAAGGGGAATGGACTTCGTGGAATTGGAGATCAGAAGGCGATGTTATGGCGAATGGTGCATTTTTTGTTGATTCAGGTGGTGAGAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTAATCCTAAAGCTGTTGATCGGATTTCAGTTCTTACTATGACTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCACCAAATGGTGGTGGTGATTATAGTATTTCATATTCAGGAGGACCAGAAGAGTACACGGATGACATGTCACATAGTACAGTGCTGTTGACCTATTCTCTTACTTTGACTCTTGTTTCCATCTTTGTTGCACTCTTTTGTTTGTTGTTTCATGATGTTTCACTATAA 1440 0.3972 MTQTTSIFLITFLSSFFTHGTSMLNLTLPGQHPDPESVALEVHRKVNVSMGRREMLSISTKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAIGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPENVGAKQVTKRLDTGEGEWTSWNWRSEGDVMANGAFFVDSGGESEGNFEKAYSINPKAVDRISVLTMTAGVLGVARDNNLGMWTRAPNGGGDYSISYSGGPEEYTDDMSHSTVLLTYSLTLTLVSIFVALFCLLFHDVSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02516 479 FunFam Pectate lyase 70 412 - -
Trre2g02516 479 Pfam Pectate lyase 154 322 IPR002022 -
Trre2g02516 479 SUPERFAMILY Pectin lyase-like 60 393 IPR011050 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Trre2g02516 479 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Trre2g02516 479 PANTHER PECTATE LYASE 18-RELATED 30 414 IPR045032 GO:0030570
Trre2g02516 479 SMART amb_all 145 342 IPR002022 -
Trre2g02516 479 Gene3D - 70 412 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02516 Trre-Chr2 21476743 21481314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02516 22 464 Polysaccharide Lyase AT3G53190 71.938 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02516 K01728 - gmx:100815062 777.704