Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02510 | ATGCAAGTTTTAGAAGATCAACTCATGTTGGTTTCAAAGGATGATCATATAACTCAACAACAAATCATAAAAGGGAAGCGAACGAAGCGTCAAAGGTTACCTTCTCCACTTAGGTTAGCCATGCCGGCCGCGTCAAATAATAATTCTTACAATGAAGGTACAAGTTATAATGATAACATGTACAATGATAATTCAAGAGGAATTGAATTTGTTAAAATTGAATCGCGCAACCGATCAGAAGAAGAAAAAGAAGAAGAAGATATGGCGAATTGTTTGATTTTATTAGCTCAAGGTCATAATCGTCGTCATGATTATCAAAATCAAGCACATGTGTCAAATCATCATGATTACAATAACAACAAACCTTCTTCAAATTTTTATCTTTATGAATGCAAGACTTGCAATCGTTGCTTTCCTTCATTTCAAGCACTTGGTGGTCATAGAGCAAGTCATAGCAAACCTAATAAGGCAAATTGTAACAATATTGTTACACAACAAAAGCAAGAAGCTACAACATCTCCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCATTGCAAGCCTTTACGGCCGCAACACCTATTACTACTACTACTGCTACCAAAAAATCAAAAGTTCACGAGTGTTCGATATGTGGTGCCGAATTTTCATCTGGGCAAGCATTGGGAGGACATATGCGGCGGCATAGAACTCTTGTGAGCACATCAACAACGACCACAACAACAACACCATCAGTGAGTTTGAGTATCGGTAGCCGTAGCCCTAGATCTCATGAAGCTAAGAAACCAAGAATTGATGGTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATCAATCAAAGTTTTCATTTCAGCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCATTGGTGGATTGCCATTACTAA | 942 | 0.3726 | MQVLEDQLMLVSKDDHITQQQIIKGKRTKRQRLPSPLRLAMPAASNNNSYNEGTSYNDNMYNDNSRGIEFVKIESRNRSEEEKEEEDMANCLILLAQGHNRRHDYQNQAHVSNHHDYNNNKPSSNFYLYECKTCNRCFPSFQALGGHRASHSKPNKANCNNIVTQQKQEATTSPFVDDHYDPTMNTILSLQAFTAATPITTTTATKKSKVHECSICGAEFSSGQALGGHMRRHRTLVSTSTTTTTTTPSVSLSIGSRSPRSHEAKKPRIDGLKLDLNLPAPEVDQRDQSKFSFQQPRENVIAFSNSSLVDCHY | 313 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02510 | 313 | SUPERFAMILY | beta-beta-alpha zinc fingers | 128 | 233 | IPR036236 | - | |
Trre2g02510 | 313 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 213 | 233 | IPR013087 | - | |
Trre2g02510 | 313 | Gene3D | Classic Zinc Finger | 191 | 255 | - | - | |
Trre2g02510 | 313 | Pfam | C2H2-type zinc finger | 129 | 154 | - | - | |
Trre2g02510 | 313 | Pfam | C2H2-type zinc finger | 210 | 234 | - | - | |
Trre2g02510 | 313 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 75 | 295 | - | - | |
Trre2g02510 | 313 | SMART | c2h2final6 | 129 | 151 | IPR013087 | - | |
Trre2g02510 | 313 | SMART | c2h2final6 | 211 | 233 | IPR013087 | - | |
Trre2g02510 | 313 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 131 | 151 | IPR013087 | - | |
Trre2g02510 | 313 | MobiDBLite | consensus disorder prediction | 238 | 258 | - | - | |
Trre2g02510 | 313 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 129 | 156 | IPR013087 | - | |
Trre2g02510 | 313 | MobiDBLite | consensus disorder prediction | 41 | 61 | - | - | |
Trre2g02510 | 313 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 211 | 233 | IPR013087 | - | |
Trre2g02510 | 313 | MobiDBLite | consensus disorder prediction | 238 | 271 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02510 | Trre-Chr2 | 21404907 | 21405848 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02510 | 9 | 313 | C2H2 Transcription Factor Family | AT5G03510 | 39.937 | 9.45e-54 | 176 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre2g02510 | zf-C2H2_6 | 1.3e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02510 | - | - | tpra:123884313 | 535.798 |