Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02510 ATGCAAGTTTTAGAAGATCAACTCATGTTGGTTTCAAAGGATGATCATATAACTCAACAACAAATCATAAAAGGGAAGCGAACGAAGCGTCAAAGGTTACCTTCTCCACTTAGGTTAGCCATGCCGGCCGCGTCAAATAATAATTCTTACAATGAAGGTACAAGTTATAATGATAACATGTACAATGATAATTCAAGAGGAATTGAATTTGTTAAAATTGAATCGCGCAACCGATCAGAAGAAGAAAAAGAAGAAGAAGATATGGCGAATTGTTTGATTTTATTAGCTCAAGGTCATAATCGTCGTCATGATTATCAAAATCAAGCACATGTGTCAAATCATCATGATTACAATAACAACAAACCTTCTTCAAATTTTTATCTTTATGAATGCAAGACTTGCAATCGTTGCTTTCCTTCATTTCAAGCACTTGGTGGTCATAGAGCAAGTCATAGCAAACCTAATAAGGCAAATTGTAACAATATTGTTACACAACAAAAGCAAGAAGCTACAACATCTCCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCATTGCAAGCCTTTACGGCCGCAACACCTATTACTACTACTACTGCTACCAAAAAATCAAAAGTTCACGAGTGTTCGATATGTGGTGCCGAATTTTCATCTGGGCAAGCATTGGGAGGACATATGCGGCGGCATAGAACTCTTGTGAGCACATCAACAACGACCACAACAACAACACCATCAGTGAGTTTGAGTATCGGTAGCCGTAGCCCTAGATCTCATGAAGCTAAGAAACCAAGAATTGATGGTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAGAGATCAATCAAAGTTTTCATTTCAGCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCATTGGTGGATTGCCATTACTAA 942 0.3726 MQVLEDQLMLVSKDDHITQQQIIKGKRTKRQRLPSPLRLAMPAASNNNSYNEGTSYNDNMYNDNSRGIEFVKIESRNRSEEEKEEEDMANCLILLAQGHNRRHDYQNQAHVSNHHDYNNNKPSSNFYLYECKTCNRCFPSFQALGGHRASHSKPNKANCNNIVTQQKQEATTSPFVDDHYDPTMNTILSLQAFTAATPITTTTATKKSKVHECSICGAEFSSGQALGGHMRRHRTLVSTSTTTTTTTPSVSLSIGSRSPRSHEAKKPRIDGLKLDLNLPAPEVDQRDQSKFSFQQPRENVIAFSNSSLVDCHY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02510 313 SUPERFAMILY beta-beta-alpha zinc fingers 128 233 IPR036236 -
Trre2g02510 313 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Trre2g02510 313 Gene3D Classic Zinc Finger 191 255 - -
Trre2g02510 313 Pfam C2H2-type zinc finger 129 154 - -
Trre2g02510 313 Pfam C2H2-type zinc finger 210 234 - -
Trre2g02510 313 PANTHER ZINC FINGER PROTEIN ZAT5 75 295 - -
Trre2g02510 313 SMART c2h2final6 129 151 IPR013087 -
Trre2g02510 313 SMART c2h2final6 211 233 IPR013087 -
Trre2g02510 313 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Trre2g02510 313 MobiDBLite consensus disorder prediction 238 258 - -
Trre2g02510 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Trre2g02510 313 MobiDBLite consensus disorder prediction 41 61 - -
Trre2g02510 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 233 IPR013087 -
Trre2g02510 313 MobiDBLite consensus disorder prediction 238 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02510 Trre-Chr2 21404907 21405848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02510 9 313 C2H2 Transcription Factor Family AT5G03510 39.937 9.45e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02510 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02510 - - tpra:123884313 535.798