Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g02509 | ATGGCGGTTCCTGGGAGGCGCAATGGTTTGAACGAAGACGATGAAGAAGAATCCAACGGTCTTTTCGAAGAAGTTCTCGTTGAAGAAACTGATACTCCTCCTCATCTTCGTGACCTTTCCCATGCTGCTCAAAACGGCGATCTCAACGCCCTCCGCCTCGCTCTCGATAACTTGAGTGGTAGTATTGATGAACCGGTGGAGGATGGTGATACGGCTCTTCATTTGACCTGTTTATATGGCCATTTCCAATGCGCACAGCTGCTACTAGAAAGAGGAGCTGACTTGGAAGCTAAGGATGAAGATGGGGCAATTCCTTTACACGATGCATGTGCGGGAGGATTTTTGGAGATAGTCCAACTTCTATTTAACAGAGCTAGTGACGCTGAGCATATAAAAAGGATGCTAGAATCAGTTGATTCCGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGCTGATGTAATTAGGTTGTTGCTGTCTAATGGTGCGTCATCCACAAAGCAAAACTTATATGGAAAGACCCCTGCGGAGTTACCTGAACACAGCACGGAAGCTAGGAGGCTGCTTGAAGCTGCTGCTACCGCCATGGCAATCTAA | 606 | 0.4752 | MAVPGRRNGLNEDDEEESNGLFEEVLVEETDTPPHLRDLSHAAQNGDLNALRLALDNLSGSIDEPVEDGDTALHLTCLYGHFQCAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLFNRASDAEHIKRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASSTKQNLYGKTPAELPEHSTEARRLLEAAATAMAI | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g02509 | 201 | ProSiteProfiles | Ankyrin repeat profile. | 101 | 133 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | Pfam | Ankyrin repeats (3 copies) | 39 | 99 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | Pfam | Ankyrin repeats (3 copies) | 101 | 171 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | ProSiteProfiles | Ankyrin repeat profile. | 141 | 173 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | FunFam | BRCA1-associated RING domain protein 1 | 33 | 200 | - | - | |
| Trre2g02509 | 201 | ProSiteProfiles | Ankyrin repeat region circular profile. | 101 | 127 | - | - | |
| Trre2g02509 | 201 | SUPERFAMILY | Ankyrin repeat | 39 | 181 | IPR036770 | - | |
| Trre2g02509 | 201 | Gene3D | - | 33 | 200 | IPR036770 | - | |
| Trre2g02509 | 201 | SMART | ANK_2a | 34 | 64 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | SMART | ANK_2a | 101 | 130 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | SMART | ANK_2a | 68 | 97 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | SMART | ANK_2a | 141 | 170 | IPR002110 | GO:0005515 | |
| Trre2g02509 | 201 | PANTHER | SOWAH (DROSOPHILA) HOMOLOG | 8 | 197 | - | - | |
| Trre2g02509 | 201 | ProSiteProfiles | Ankyrin repeat region circular profile. | 68 | 100 | - | - | |
| Trre2g02509 | 201 | ProSiteProfiles | Ankyrin repeat region circular profile. | 141 | 167 | - | - | |
| Trre2g02509 | 201 | ProSiteProfiles | Ankyrin repeat profile. | 68 | 100 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g02509 | Trre-Chr2 | 21393262 | 21394913 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g02509 | 39 | 184 | Ion Channels | AT2G25600 | 31.429 | 1.86e-13 | 66.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g02509 | - | - | gmx:100527544 | 304.293 |