Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02497 ATGGAAACCACCAACCAGAACCTAGAAACTGACACTTTCAAGATGCAGCAGCAACGGCGGCGAGGTCAATTGGTTGTGAACGGTTACTTCGTTTACACACGACGAAAGAGGATCGAGCATGATTCCGACAACGAGAAAGCGAAGAGGCTGAAAACCGAAGAAAATGAACAAGTTAAGGTGACAATTTGTGAGGCGGTGAAGAACGACGTCGTTTTATGGACTTCGAAACGGCAGCGGAGACCGTCGTTTAAGTTGAAGAATGAATCAGAAGATGATCGTTCTGGTGATAAGGTAGCTGCTCGCGTTGTGAATACGAAGAAGAGCGTTGCGTTTAACGAGAAGCTAATGTCTGTGAAAGAGCTCTTTGATACTGGTTTGCTCGATGGTGTTCCAGTTGTTTACGTCGGTTGCAAGAAGGAGGCTTCGGATTCGGGATTGCAGGGTGTAATTGCTGGTGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGTAGAATTATTCCCCCCTCCCAATTTGAGATTCATGCCTGCAAAATATATAAAAGGGCAACGCAGTATATTTGTTTTGAAAACGGGAAGAGTCTGCTTGAACTACTGGGAGTTTGCAGGGCAGCTCCCTTACATGCTTTAGAGGCCACTATTCAAAACTTTCTTTGTTTACCACCTGAAGAGAAATATTTTACTTGCAGGAGTTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTGGGGCTTATATGCCATTCTTGCATGGAAACAAGTAAATCTGAAAATGGTTCTATTCGTGCGGTTGGCAAAAGAGTCAGGACTCCTCGGCCGTATTTGTTCTCTAGTCCATCTAGTATTTCTGAAACGTGTGTCTCATCACAAACTAAGAAACAAAAGAAGAAGAGAACAAAGTCATCAAAACTGACAGTCAAGTTGAAGATTGCTCCAGTTACGTCAAATTCAAAGTGTTCATCTCCACAAAATAAGAGTCAATGGAAGATCAATAAGAAGCATCAACGATTGCATAAAATAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCCCGTGGACAGAAATATCTTGAGGGTATTAAAAAGAAATCTGGAATTATTTGTCGATGCTGCAACACTGAGATCAGCCCCGCACAGTTTGAGATTCATGCAGGGTGGGCTTATCGTAGGAAGCCTTATGCATACATCTACACTTCGAATGGAGTGTCTCTCCACGAGTTGGCATTATTCCTCTCAAAAGATCGCAAATGCACTGCAAAATATAATGATCATGCATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCACAAAGAATGTGCATCTGTATCAAGTACTCCACGACGTGGTCGGTACTGTCCAATCTGTCAACACAAGTTCTTTGGAGAAGGATCCGTGGCTCTCAATCCTGATGCTGTAGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATAGAACAGATTGCTAAGAGATGCATTCGGATAGTGAAAGACATCGAAGCTGAGATTGGTGGATGTGCTGGTGGATGTGCTTTATGCAGAGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGTACAATAATAATATGTGATCAGTGTGAAAAGGAATATCACGTGGGCTGTTTGAGGGATCATAAAATGGCATATTTGAAGGAATTGCCGGAAGGGGATTGGCTTTGCTGCAATGATTGCATAAGAATACATTCTATTTTAGGGAACCTCCTAGTTAGGGTGGCTGAGAGTCTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGAAAGAAGAAAGATGTTTGGAACCCCTTAATGAGATTGATATAAGATGGAAACTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCGTTGCTTTTGGAGGCACTGTCAATATTCAACGAATGCTTTGATCCTATAGTTGACGCAGCTACGGAACGTGACCTTATTCCTTCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATTTGTGGTATCTGCGGGTATGCTTCGGATTTTTGGGAGAGATATTGCAGAACTCCCTTTAATTGCTACAAGACACAAGAACCGTGGAAAGGGCTACTTCCAAACATTGTTCTCGTGTATTGAAAGGTTGCTGGCCTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGTATCCATATGGATAAATAAATTTGGGTTTAGCAGGATGAGACCCGAGCAGATTGTCAACTATAGAAAGAACTGCCAGCAGATGATGGCATTCAAAGGGACAGTTATGCTTCATAAAACAGTACCTCAATGTCGGGTAATTAAATCATGA 2406 0.426 METTNQNLETDTFKMQQQRRRGQLVVNGYFVYTRRKRIEHDSDNEKAKRLKTEENEQVKVTICEAVKNDVVLWTSKRQRRPSFKLKNESEDDRSGDKVAARVVNTKKSVAFNEKLMSVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRIIPPSQFEIHACKIYKRATQYICFENGKSLLELLGVCRAAPLHALEATIQNFLCLPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCMETSKSENGSIRAVGKRVRTPRPYLFSSPSSISETCVSSQTKKQKKKRTKSSKLTVKLKIAPVTSNSKCSSPQNKSQWKINKKHQRLHKIIFEEDGLPDGAEVAYYARGQKYLEGIKKKSGIICRCCNTEISPAQFEIHAGWAYRRKPYAYIYTSNGVSLHELALFLSKDRKCTAKYNDHACIVCWDGGNLLLCDGCPRAFHKECASVSSTPRRGRYCPICQHKFFGEGSVALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEIGGCAGGCALCRGSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCIRIHSILGNLLVRVAESLPESLLDVIKKKKEERCLEPLNEIDIRWKLVNGKVASPETRPLLLEALSIFNECFDPIVDAATERDLIPSMVYGRNLQTQDFGGMYCALLMVNSFVVSAGMLRIFGRDIAELPLIATRHKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAVSIWINKFGFSRMRPEQIVNYRKNCQQMMAFKGTVMLHKTVPQCRVIKS 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02497 801 Gene3D - 622 792 - -
Trre2g02497 801 SUPERFAMILY FYVE/PHD zinc finger 429 477 IPR011011 -
Trre2g02497 801 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 675 766 IPR016181 -
Trre2g02497 801 ProSiteProfiles Zinc finger PHD-type profile. 431 476 IPR019787 -
Trre2g02497 801 Pfam Tify domain binding domain 370 416 IPR032308 -
Trre2g02497 801 Pfam Tify domain binding domain 148 200 IPR032308 -
Trre2g02497 801 SUPERFAMILY FYVE/PHD zinc finger 526 579 IPR011011 -
Trre2g02497 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 509 IPR013083 -
Trre2g02497 801 SMART PHD_3 433 474 IPR001965 -
Trre2g02497 801 SMART PHD_3 525 582 IPR001965 -
Trre2g02497 801 PANTHER AUTOIMMUNE REGULATOR 66 792 - -
Trre2g02497 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 524 584 IPR013083 -
Trre2g02497 801 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 518 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02497 Trre-Chr2 21246749 21253701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02497 96 799 PHD Transcription Factor Family AT2G36720 49.598 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02497 - - gmx:100798276 1145.18