Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02496 ATGGAAACCACCAACCAGAACCTAGAAACTGACACTTTCAAGATGCAGCAGCAACGGCGGCGAGGTCAATTGGTTGTGAACGGTTACTTCGTTTACACACGACGAAAGAGGATCGAGCATGATTCCGACAACGAGAAAGCGAAGAGGCTGAAAACCGAAGAAAATGAACAAGTTAAGGTGACAATTTGTGAGGCGGTGAAGAACGACGTCGTTTTATGGACTTCGAAACGGCAGCGGAGACCGTCGTTTAAGTTGAAGAATGAATCAGAAGATGATCGTTCTGGTGATAAGGTAGCTGCTCGCGTTGTGAATACGAAGAAGAGCGTTGCGTTTAACGAGAAGCTAATGTCTGTGAAAGAGCTCTTTGATACTGGTTTGCTCGATGGTGTTCCAGTTGTTTACGTCGGTTGCAAGAAGGAGGCTTCGGATTCGGGATTGCAGGGTGTAATTGCTGGTGGGGGGATATTGTGCTCGTGCTGTCTGTGCAATGGACGTAGAATTATTCCCCCCTCCCAATTTGAGATTCATGCCTGCAAAATATATAAAAGGGCAACGCAGTATATTTGTTTTGAAAACGGGAAGAGTCTGCTTGAACTACTGGGAGTTTGCAGGGCAGCTCCCTTACATGCTTTAGAGGCCACTATTCAAAACTTTCTTTGTTTACCACCTGAAGAGAAATATTTTACTTGCAGGAGTTGCAGAGGGTGTTTCCCTGTTTCAACTGTGAAAAGAGTGGGGCTTATATGCCATTCTTGCATGGAAACAAGTAAATCTGAAAATGGTTCTATTCGTGCGGTTGGCAAAAGAGTCAGGACTCCTCGGCCGTATTTGTTCTCTAGTCCATCTAGTATTTCTGAAACGTGTGTCTCATCACAAACTAAGAAACAAAAGAAGAAGAGAACAAAGTCATCAAAACGGGTTAGCATGTCAAAATCTTCCAGGAAGAGTGCTTCCGCGCCTGTACTTATCCAGAAGAAAAGTTTGTGCAACATGGAAACAAAGTCATCAAAACTGACAGTCAAGTTGAAGATTGCTCCAGTTACGTCAAATTCAAAGTGTTCATCTCCACAAAATAAGAGTCAATGGAAGATCAATAAGAAGCATCAACGATTGCATAAAATAATTTTTGAAGAAGATGGATTGCCTGATGGAGCTGAAGTAGCTTATTATGCCCGTGGACAGAAATATCTTGAGGGTATTAAAAAGAAATCTGGAATTATTTGTCGATGCTGCAACACTGAGATCAGCCCCGCACAGTTTGAGATTCATGCAGGGTGGGCTTATCGTAGGAAGCCTTATGCATACATCTACACTTCGAATGGAGTGTCTCTCCACGAGTTGGCATTATTCCTCTCAAAAGATCGCAAATGCACTGCAAAATATAATGATCATGCATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCACAAAGAATGTGCATCTGTATCAAGTACTCCACGACGTGGTCGGTACTGTCCAATCTGTCAACACAAGTTCTTTGGAGAAGGATCCGTGGCTCTCAATCCTGATGCTGTAGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATAGAACAGATTGCTAAGAGATGCATTCGGATAGTGAAAGACATCGAAGCTGAGATTGGTGGATGTGCTGGTGGATGTGCTTTATGCAGAGGTTCTGACTTCAGCAGATCAGGATTTGGTCCACGTACAATAATAATATGTGATCAGTGTGAAAAGGAATATCACGTGGGCTGTTTGAGGGATCATAAAATGGCATATTTGAAGGAATTGCCGGAAGGGGATTGGCTTTGCTGCAATGATTGCATAAGAATACATTCTATTTTAGGGAACCTCCTAGTTAGGGTGGCTGAGAGTCTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGAAAGAAGAAAGATGTTTGGAACCCCTTAATGAGATTGATATAAGATGGAAACTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCGTTGCTTTTGGAGGCACTGTCAATATTCAACGAATGCTTTGATCCTATAGTTGACGCAGCTACGGAACGTGACCTTATTCCTTCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATTTGTGGTATCTGCGGGTATGCTTCGGATTTTTGGGAGAGATATTGCAGAACTCCCTTTAATTGCTACAAGACACAAGAACCGTGGAAAGGGCTACTTCCAAACATTGTTCTCGTGTATTGAAAGGTTGCTGGCCTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGTATCCATATGGATAAATAAATTTGGGTTTAGCAGGATGAGACCCGAGCAGATTGTCAACTATAGAAAGAACTGCCAGCAGATGATGGCATTCAAAGGGACAGTTATGCTTCATAAAACAGTACCTCAATGTCGGGTAATTAAATCATGA 2502 0.4261 METTNQNLETDTFKMQQQRRRGQLVVNGYFVYTRRKRIEHDSDNEKAKRLKTEENEQVKVTICEAVKNDVVLWTSKRQRRPSFKLKNESEDDRSGDKVAARVVNTKKSVAFNEKLMSVKELFDTGLLDGVPVVYVGCKKEASDSGLQGVIAGGGILCSCCLCNGRRIIPPSQFEIHACKIYKRATQYICFENGKSLLELLGVCRAAPLHALEATIQNFLCLPPEEKYFTCRSCRGCFPVSTVKRVGLICHSCMETSKSENGSIRAVGKRVRTPRPYLFSSPSSISETCVSSQTKKQKKKRTKSSKRVSMSKSSRKSASAPVLIQKKSLCNMETKSSKLTVKLKIAPVTSNSKCSSPQNKSQWKINKKHQRLHKIIFEEDGLPDGAEVAYYARGQKYLEGIKKKSGIICRCCNTEISPAQFEIHAGWAYRRKPYAYIYTSNGVSLHELALFLSKDRKCTAKYNDHACIVCWDGGNLLLCDGCPRAFHKECASVSSTPRRGRYCPICQHKFFGEGSVALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEIGGCAGGCALCRGSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWLCCNDCIRIHSILGNLLVRVAESLPESLLDVIKKKKEERCLEPLNEIDIRWKLVNGKVASPETRPLLLEALSIFNECFDPIVDAATERDLIPSMVYGRNLQTQDFGGMYCALLMVNSFVVSAGMLRIFGRDIAELPLIATRHKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAVSIWINKFGFSRMRPEQIVNYRKNCQQMMAFKGTVMLHKTVPQCRVIKS 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02496 833 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 707 798 IPR016181 -
Trre2g02496 833 Pfam Tify domain binding domain 402 448 IPR032308 -
Trre2g02496 833 Pfam Tify domain binding domain 148 200 IPR032308 -
Trre2g02496 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 541 IPR013083 -
Trre2g02496 833 Gene3D - 654 824 - -
Trre2g02496 833 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 551 616 - -
Trre2g02496 833 SUPERFAMILY FYVE/PHD zinc finger 461 509 IPR011011 -
Trre2g02496 833 MobiDBLite consensus disorder prediction 277 291 - -
Trre2g02496 833 ProSiteProfiles Zinc finger PHD-type profile. 463 508 IPR019787 -
Trre2g02496 833 PANTHER AUTOIMMUNE REGULATOR 66 824 - -
Trre2g02496 833 MobiDBLite consensus disorder prediction 294 309 - -
Trre2g02496 833 SUPERFAMILY FYVE/PHD zinc finger 558 611 IPR011011 -
Trre2g02496 833 MobiDBLite consensus disorder prediction 277 319 - -
Trre2g02496 833 SMART PHD_3 557 614 IPR001965 -
Trre2g02496 833 SMART PHD_3 465 506 IPR001965 -
Trre2g02496 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 616 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02496 Trre-Chr2 21246749 21253701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02496 96 831 PHD Transcription Factor Family AT2G36720 49.800 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02496 - - gmx:100798276 1125.15