Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02488 ATGTTGGTTCCTCCATGGCTCAAACCACTACTTAACACACCATTTTTCAATGTTTGTCGGATTCACGGCGACGCTGCAAGAAGTGAATGTAACATGTTTTGTCTAGATTGCAATGTTGATGCCTTTTGCTTCTATTGTCGTTCTTCAAGACACAAGGATCATCAAGTCATTCAGATAAGAAGATCTTCGTATCACGATGTAGTGAAGGTGGGTGAAATTCAGAAAATATTGGACATTAGTGGAGTTCAAACATATGTGATTAATAGTGCTAGAGTTTTGTTTCTGAATGAAAGGCCTCAACCAAAAACTGGAAAAGCTGTTTCTTACATTTGTGAGATTTGTGGAAGAAGCCTTTTAGACCATGTTCGTTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAAGAGAAATGGGAATGCAAGCTTTGTTTTAGATGCTAATAACAAGGAAGTATCAACAATGGAAGAAGGAATGTCAAGACAACAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGGCATGTATCCAGCCACACCTCCTTCAAATGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCTCCTTTTGGATCCTAA 594 0.3906 MLVPPWLKPLLNTPFFNVCRIHGDAARSECNMFCLDCNVDAFCFYCRSSRHKDHQVIQIRRSSYHDVVKVGEIQKILDISGVQTYVINSARVLFLNERPQPKTGKAVSYICEICGRSLLDHVRFCSLGCKLVGIKRNGNASFVLDANNKEVSTMEEGMSRQQEEELREGSQQGMYPATPPSNARRRKGIPHRAPFGS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02488 197 MobiDBLite consensus disorder prediction 153 197 - -
Trre2g02488 197 Gene3D Classic Zinc Finger 17 62 - -
Trre2g02488 197 Pfam PLATZ transcription factor 60 131 IPR006734 -
Trre2g02488 197 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 195 - -
Trre2g02488 197 SUPERFAMILY B-box zinc-binding domain 16 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02488 Trre-Chr2 21170327 21171555 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre2g02488 PLATZ 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02488 - - gmx:100809455 345.51