Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02485 ATGGAACAATCTTCTACAACCTCTCCACCACCGCCGACTAAAAGCTGGGCCGATCAAGCAGACGATGAAGATGCCAATCCATCTTCAAGCTCCGCCGCCGAAACCGAAACACCTTCGTTCGATGAATTAACAATCGACGAGGACAAGAAGTCTTCTTCTAAATTATTAGACGATCCCGATGACGCCAACATTCAAGCGGTTATATCTGGCGATACTCCATACACATCGGCGGCGACATTTGAAGAATTGTCACTTTCGCCGGAGCTTTTGAAGGGACTCTATGTAGAGATGAAGTTTCAAAAACCTAGCAAAATTCAAGCTGTGAGTTTGCCAATGATTCTTAATCCTCCACATAGAGATTTGATAGCGCAGGCACATAATGGTTCAGGAAAAACCACTTGTTTTGTGCTTGGAATGCTTAGTCGTGTTGATCCAACCTTGCAAGCTCCTCAAGCTCTTTGCATTTGCCCCACTAGAGAGTTGGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGGAAGTACACAGGGATTAGCTCAGAATCTGCAATTCCTATGGACAAAAGGGATTCAATTCCGATATCAAAAAGGTCGCCTATTATGGCTCAGATTGTTATTGGCACTCCTGGCACGATTAAGAATTTGATGACTTATAAGAAACTTGGGGTGACAAGATTGAAGATTCTTGTTTTTGATGAGGCCGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCTCTGAGGATAATGAAAGAAATAGAAAAATTCAATTCAAACTGTCAGGTTCTTCTGTTTTCTGCTACGTTTAGTGACATTGTCAAGAGTTTTGTTACAAGGATTGTTGAGAAGAAGGAGCATAATAAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTGAAGCAGTACAAAGTTCGTGTTCCTGATGAACTCCAGAAGATTGAAGTGATTAAAGATTATATATTTGATATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCATAAAGCTCTTGTTGATTTAGGCTATGAGGTTACTTCCATACATGGTCTTCTTGAACATGACGAGAGAGACAAGATTGTCAAGGAGTTTAAAGATGGTTTGACCCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAGCAGGTTAATTTGGTTATCAACTATGATCTTCCAACGAAGTACCGTGATCCTGCGCCTGATTTTGAGGTGTATTTGCATAGAGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGAGATGAAGAGCTCATGTCAAAGATTGAAAACCATTTTGGCACACATATAAAAGAGGTGGAACGAAAAAGTAAGGAAGACTATAAAGCTGCTCTTAAGGAAGCTGGTTTAATGGATTGA 1452 0.4091 MEQSSTTSPPPPTKSWADQADDEDANPSSSSAAETETPSFDELTIDEDKKSSSKLLDDPDDANIQAVISGDTPYTSAATFEELSLSPELLKGLYVEMKFQKPSKIQAVSLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSESAIPMDKRDSIPISKRSPIMAQIVIGTPGTIKNLMTYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFSDIVKSFVTRIVEKKEHNKLFVKKEELSLDAVKQYKVRVPDELQKIEVIKDYIFDIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIHGLLEHDERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPTKYRDPAPDFEVYLHRVGRAGRFGRKGAVFNLICGERDEELMSKIENHFGTHIKEVERKSKEDYKAALKEAGLMD 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02485 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 450 IPR027417 -
Trre2g02485 483 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 288 IPR014001 -
Trre2g02485 483 Gene3D - 60 295 IPR027417 -
Trre2g02485 483 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 472 IPR001650 -
Trre2g02485 483 CDD SF2_C_DEAD 302 441 - -
Trre2g02485 483 CDD DEADc_DDX19_DDX25 85 282 - -
Trre2g02485 483 MobiDBLite consensus disorder prediction 22 38 - -
Trre2g02485 483 Gene3D - 296 473 IPR027417 -
Trre2g02485 483 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 451 - -
Trre2g02485 483 Pfam Helicase conserved C-terminal domain 315 432 IPR001650 -
Trre2g02485 483 MobiDBLite consensus disorder prediction 1 58 - -
Trre2g02485 483 Pfam DEAD/DEAH box helicase 104 275 IPR011545 GO:0003676|GO:0005524
Trre2g02485 483 MobiDBLite consensus disorder prediction 42 57 - -
Trre2g02485 483 SMART ultradead3 98 305 IPR014001 -
Trre2g02485 483 SMART helicmild6 344 432 IPR001650 -
Trre2g02485 483 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 107 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02485 Trre-Chr2 21157724 21164324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02485 79 464 Eukaryotic Initiation Factors Gene Family AT1G72730 36.641 1.51e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02485 K18655 - gmx:100778091 722.62