Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02483 ATGGCGGATTCTGAGATACAAACAATGGCTAAACCGGCGTCACTTTACGTCGGCGATCTTCACTCCGATGTAACCGATGATCTTCTGTATAAGGCATTTTCGGAATTCAAGAGCCTCATTTCCGTTCGAGTCTGTAGGGATTCAGTGACTGCAAAATCCCTCTGTTACGGTTACGTCAACTTCACCTCTCATCAAGAAGCAATTCGTGCAATTGAATTGAAGAATCATTCTTTACTCAATGGAAAAGTGATAAGGGTCATGTGGTCAAGTCGTGATGCTGATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCTATAGATAATTTGGGACTACATGATTTATTTCAAAAATATGGGAAAATTTTGTCCAGCAAAATTGTCATGTCTGAGGATGGGAAGAGCAAAGGGTATGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGGGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAATATTACCAAAGAACATCTTCAAGAAAAGTTCTCCTCTTTTGGAAAGATTATTAGCTTGGCTATTGCAAAGGATGGGAATGGGTTGTCAAAAGGCTTTGGATTTGTGAACTATGACAACCCAGATGATGCTAGACGAGCAATGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACTTGTATGTTGCAAGGGCACAAAAAAAGGTTGAACGTGAGCAGATATTGCATCACTTGTTTGTGGAAAAATGCAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGATGAAGAACTACGGAACCAGTTTAGTGCATGTGGCACAATATTGTCTGCAAAAATTATGCGAGATGACAAAGGGATTAGCAAGGGGTTTGGTTTTGTCTGTTTCTCTACCCTGGATGAGGCTGTTAAGTCTGTGAACAGTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGCTTTTGCTCAGAAGAAAGAGCTACTGGTGTTGTTTATCACCCTTCGGGATCAGGATGGAGTGCTAATGGCTTTGCAGCTCCTTCTAAAGCATTTCAACAATCACCAGCTTCTACTATTTCCATCAATGGTAAGCAGCATTGGGATGAATGACAATATGAATTCAAAAGAGTCGAGTACTCATTCAGTACAGGCCAAGCATGTCGCTAGTGGATGCCAACTGGAGATGGAAGACAAAGCTGGAATTTCATCAGCTATGCAGGTTCTTCACCTTCAGAAGACCAAAGTTTCTGGCCAGGATGTACTTCATTCAAATTCTATTGCAGCCGAGGTTGCAGTCATTTGA 1359 0.4062 MADSEIQTMAKPASLYVGDLHSDVTDDLLYKAFSEFKSLISVRVCRDSVTAKSLCYGYVNFTSHQEAIRAIELKNHSLLNGKVIRVMWSSRDADARKSGRGNVFVKNLAESIDNLGLHDLFQKYGKILSSKIVMSEDGKSKGYGYIQFDSEESANDAIQKMNGSTVGDKQIYVGKFIRKNITKEHLQEKFSSFGKIISLAIAKDGNGLSKGFGFVNYDNPDDARRAMEAMNGSQFGSKNLYVARAQKKVEREQILHHLFVEKCKGSNIYVKNIDDSVSDEELRNQFSACGTILSAKIMRDDKGISKGFGFVCFSTLDEAVKSVNSFNGCMFHGKPLYVAFAQKKELLVLFITLRDQDGVLMALQLLLKHFNNHQLLLFPSMVSSIGMNDNMNSKESSTHSVQAKHVASGCQLEMEDKAGISSAMQVLHLQKTKVSGQDVLHSNSIAAEVAVI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02483 452 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Trre2g02483 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 184 IPR000504 GO:0003723
Trre2g02483 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Trre2g02483 452 FunFam Polyadenylate-binding protein 102 182 - -
Trre2g02483 452 SUPERFAMILY RNA-binding domain, RBD 179 253 IPR035979 GO:0003676
Trre2g02483 452 Gene3D - 102 175 IPR012677 -
Trre2g02483 452 CDD RRM4_I_PABPs 265 343 - -
Trre2g02483 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 247 IPR000504 GO:0003723
Trre2g02483 452 FunFam Polyadenylate-binding protein 6 100 - -
Trre2g02483 452 PANTHER RNA BINDING PROTEIN 266 345 - -
Trre2g02483 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 336 IPR000504 GO:0003723
Trre2g02483 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Trre2g02483 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Trre2g02483 452 SUPERFAMILY RNA-binding domain, RBD 265 345 IPR035979 GO:0003676
Trre2g02483 452 Gene3D - 2 101 IPR012677 -
Trre2g02483 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 343 IPR000504 GO:0003723
Trre2g02483 452 SMART rrm1_1 14 87 IPR000504 GO:0003723
Trre2g02483 452 SMART rrm1_1 267 339 IPR000504 GO:0003723
Trre2g02483 452 SMART rrm1_1 175 243 IPR000504 GO:0003723
Trre2g02483 452 SMART rrm1_1 102 174 IPR000504 GO:0003723
Trre2g02483 452 Gene3D - 176 262 IPR012677 -
Trre2g02483 452 Gene3D - 263 346 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02483 Trre-Chr2 21105057 21108555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02483 2 345 Eukaryotic Initiation Factors Gene Family AT2G36660 57.373 1.80e-150 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02483 K13126 - gmx:100798828 509.22