Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02471 ATGGGTGATAACCGCGAACACGACAACACCGAAAGCAGCGATTTCACCTCCGAAGATGAAGGAACCGAAGATTACCGACGCGGTGGTTACCACGCCGTCCGAATCGGCGACACTTTTAACTCCGGTCGTTATGTCGTTCAGAGCAAGCTCGGTTGGGGTCATTTCTCCACTGTCTGGCTCGCTTGGGATACTCATCATTCTAGATACGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCTGCCTTGGATGAGATAACGATATTGCAACAGATTGCGGAGGGAGACACCGATGATAACAAATGTGTGGTCAAGCTTTTGGACCATTTTAAGCATTCTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAATACCTTGGGGATAACCTTTTAACTCTTATTAAGTATAGTGATTATCGTGGAATGCCTATCAGCATGGTTAAAGAGATATGCTTTCATATTTTGGTTGGACTGGATTACTTACATAAGCAACTTTCTATCATACACACTGACTTGAAACCCGAAAATATCCTTCTCTTATCAACAATTGATCCGTCTAAGGATCCTAGAAAGTCTGGTGCTCCTCTTATTCTTCCTAATAGTAAAGACAAGACCATGCTGGAGTCAACGTCTGCAAAAGACACAAAAACATCAAATGGAGATTTGATTAAGAATCATAAGAAAAATATTAAGAGAAAAGCCAAGCAAGCAGCTCATGGATGTGCTGAGAAGGAAGCATCCGAAGGAGCTGATGGTAATCATGATACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCAAGAGAACAAGCTTCTAGTTCTGCTGGCACTAGTAGGTTATCGGATGCTGATGGAACAAAGCTAAAAGAGCAGGGCAACAGAAGAGGAAGCCGCACGGTGAGACAGAAACTGCTTGCCTCAGTTGATGTCAAGTGCAAGTTGGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGACATTCAGACAAGACAATATCGGTGCCCAGAGGTTATCCTTGGATCAAAATATTCTACATCTGCAGATCTTTGGTCGTTTGCTTGCATATGTTTCGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCATAGTGGTGATAACTTTGATAGGGATGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGATTGCACTAGGGGGGCGTTATTCCCGGGATTTCTTCAATAGGTATGGTGATTTGAGACACATCCGTCGGCTGCGATTCTGGCCGTTGAATAAAGTGCTCATGGAGAAGTACGATTTTAGTGAGAAAGATGCAAGTGACATGAGTGACTTTTTGGTTTCTATCCTTGACTTTGTTCCTGAGAAAAGACCTACAGCCGGTCAATGCCTGCTACATCCATGGATGAATGCAGGTCCCCGTCTTTTGGAGCCATCGGTGCCTTCTTCTAATCACAACCCTGCGGTGCCTTCTTCTAATCACAACCCTGCGGGTGAAACTGCTACTTCTGACCAGAAGAATAAAGACAAAGATGAGAGGGAAGCCATGGAGGCTGGAATTGGAAATATCGCCATCAATTCAGATTCTAAACCACTCATGCATTCTCCATCCAAAAAAGCCTTCCAAGGAAGCCGCAAGTAG 1668 0.4376 MGDNREHDNTESSDFTSEDEGTEDYRRGGYHAVRIGDTFNSGRYVVQSKLGWGHFSTVWLAWDTHHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDTDDNKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPISMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAPLILPNSKDKTMLESTSAKDTKTSNGDLIKNHKKNIKRKAKQAAHGCAEKEASEGADGNHDTSGAVESSPNASSAREQASSSAGTSRLSDADGTKLKEQGNRRGSRTVRQKLLASVDVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPTAGQCLLHPWMNAGPRLLEPSVPSSNHNPAVPSSNHNPAGETATSDQKNKDKDEREAMEAGIGNIAINSDSKPLMHSPSKKAFQGSRK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02471 555 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Trre2g02471 555 MobiDBLite consensus disorder prediction 240 255 - -
Trre2g02471 555 FunFam CMGC/SRPK protein kinase 30 129 - -
Trre2g02471 555 MobiDBLite consensus disorder prediction 289 303 - -
Trre2g02471 555 MobiDBLite consensus disorder prediction 192 305 - -
Trre2g02471 555 SUPERFAMILY Protein kinase-like (PK-like) 39 493 IPR011009 -
Trre2g02471 555 MobiDBLite consensus disorder prediction 260 287 - -
Trre2g02471 555 Gene3D Transferase(Phosphotransferase) domain 1 127 479 - -
Trre2g02471 555 Pfam Protein kinase domain 311 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02471 555 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02471 555 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02471 555 MobiDBLite consensus disorder prediction 512 526 - -
Trre2g02471 555 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 519 - -
Trre2g02471 555 FunFam Serine/threonine-protein kinase SRPK-like protein 308 478 - -
Trre2g02471 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Trre2g02471 555 MobiDBLite consensus disorder prediction 1 24 - -
Trre2g02471 555 MobiDBLite consensus disorder prediction 485 555 - -
Trre2g02471 555 CDD STKc_SRPK 33 478 - -
Trre2g02471 555 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02471 555 MobiDBLite consensus disorder prediction 486 511 - -
Trre2g02471 555 MobiDBLite consensus disorder prediction 207 222 - -
Trre2g02471 555 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02471 Trre-Chr2 20978599 20986449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02471 10 539 EF-hand Containing Proteins AT5G22840 69.043 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre2g02471 Pkinase 2.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02471 K08832 - gmx:100810777 990.334