Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02466 ATGGAGTGGAATGGGAACCAAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAATCAAACCCCATATCAAGGAATGATGGAAGTGAAACAACAAGAGTGGACAGAGACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGAATCCAAGAAAAGAAAAAGAGATTAACTAGTGAACAGATGGAATCACTGGAGAGTAGTTTCCAGGAGGAAATAAAGTTAGATCCTCAAAGGAAGATGAAGCTTTCCAAAGAGTTAGGGCTACAGCCTCGCCAAATCGCTGTTTGGTTTCAGAATAGGCGTGCAAGATGGAAGACCAAGCAACTTGAACAACTTTATGATTCACTTAAACACCAATTTAATGTTGTGTCCAAGGAAAAACAGCAGCTTCAGGATGAGGTAATGAAATTAAAGGCTATGTTGAAAGAGCAAGGTTGTTCTTCTAGTAGAATGCAATGTTACTATTCAGAAATGTCAGGAGAAGAAACAGAAACAGTAGAAAGCACATCAGAAGCAGCTCTACTTTGTTCCAATAGGGAGGTTAAGGGAAAAAATCAACACCAGGTCAACATTGCAGAGGGAAACTGTTGTTACAATTTGGAGGATTATAACTTTAACAACAGTGTTCCACTTTTACCCTACTGGCCTAATGTTCCTCATAACTATCAACCATAA 696 0.3894 MEWNGNQRSFVPQPESSLSFLYNYNQTPYQGMMEVKQQEWTETMFPEMEKMMKYGIQEKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEQLYDSLKHQFNVVSKEKQQLQDEVMKLKAMLKEQGCSSSRMQCYYSEMSGEETETVESTSEAALLCSNREVKGKNQHQVNIAEGNCCYNLEDYNFNNSVPLLPYWPNVPHNYQP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02466 231 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Trre2g02466 231 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Trre2g02466 231 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Trre2g02466 231 FunFam Putative homeobox-leucine zipper protein ATHB-51 56 119 - -
Trre2g02466 231 Pfam Homeobox associated leucine zipper 114 148 IPR003106 GO:0006355|GO:0043565
Trre2g02466 231 Gene3D - 52 123 - -
Trre2g02466 231 Coils Coil 120 147 - -
Trre2g02466 231 SMART HOX_1 57 118 IPR001356 GO:0003677
Trre2g02466 231 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Trre2g02466 231 CDD homeodomain 59 115 IPR001356 GO:0003677
Trre2g02466 231 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 170 IPR045224 GO:0003700
Trre2g02466 231 SUPERFAMILY Homeodomain-like 49 116 IPR009057 -
Trre2g02466 231 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02466 Trre-Chr2 20938669 20941062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02466 1 144 Homeobox Transcription Factor Family AT5G03790 53.704 3.96e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre2g02466 Homeodomain 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02466 - - gmx:100778007 280.411