Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02463 ATGGCTTCTTGCGACGACGATGACGATTTCTCAATCCTCCGTGACGATAGCCACAACTCTCACCATCTTCACCAAACCTTCGCACCACATCACCACCATCACAACCACCACACTCACCACCATTTCTCCACCGCTTCAGTCCATTCCAAACCCGTCGCCGACGACGACACCGACGATTACGGAAATCCGTTCGATGATGACGCCGGAAGCGAGAAACGTAAGGATCGAGACGAGATCGGAGACGCAACGACGTCGTACGCGTTTAACAAGAGACCAAAACCTGTTTCTAGCGGTAGCGGTGGAGTAGGAGGAGTAGGAGCAGAGTATCGGAAGGATCGTGAAGAATGGAGTGATACAGCTATTGTTTGTTTGTTGGAAGCGTATACTGAGAAGTTTGCGCAGCTTAATCGGGGAAATCTGAGAGGAAGAGATTGGGAAGAGGTAGCGTCGGTGGTGAGTGAACGGTGTGAGAATCAATCGAAGAGTGTTGAACAGTGTAAGAACAAGGTTGATAATCTGAAGAAAAGGTATAAGCTGGAGAGACATAGAATGAACAATGGATGCATCTCTAGTAGTCATTGGCCTTGGTATAAGCAGATGGAGCATATCGTCGGAAATTCTCTTCCTTCCAAGTTTGACGACGACAAAGCCATTGTTCCTGCTTCCATTTCACCTAGACAATCCAAGAGATATGGAGTTGCAACGTCCAGCAGTGGAGGTCAAATAAACAGCCTGAAGTCCAAAGCACTGCCCAACCTTAGATGGCGGAGAGTTGTTCTGAAAATTAGTGGATCAGCACTTACCGGATCAGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAGGTTGCAATCGCTTCCCGCCTTGGTGTGGAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTTTGTGGAGATGCATGGGTGACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAACTCATTACTGCTTCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGCGTACAAACTTCAGTTTCAATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCGCTTTTCTCAACCGACATAGCTGCTGCTCTTCGAGCATCAGAGGTTAATGCTCAGGCTGTCATCAAAGGTACTAACGCAGATGGTATATACGACTGCAACTCTCGAGACAACAATTTCACTTTCGAGCACATATCTTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGCAAGCCCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTTGTTTTTAATCTATTGGCACCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1485 0.464 MASCDDDDDFSILRDDSHNSHHLHQTFAPHHHHHNHHTHHHFSTASVHSKPVADDDTDDYGNPFDDDAGSEKRKDRDEIGDATTSYAFNKRPKPVSSGSGGVGGVGAEYRKDREEWSDTAIVCLLEAYTEKFAQLNRGNLRGRDWEEVASVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISSSHWPWYKQMEHIVGNSLPSKFDDDKAIVPASISPRQSKRYGVATSSSGGQINSLKSKALPNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSSEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASEVNAQAVIKGTNADGIYDCNSRDNNFTFEHISFRELVSRGVTSMDMQALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02463 494 Gene3D - 250 488 IPR036393 -
Trre2g02463 494 FunFam Uridylate kinase isoform A 247 493 - -
Trre2g02463 494 MobiDBLite consensus disorder prediction 65 81 - -
Trre2g02463 494 Hamap Uridylate kinase [pyrH]. 253 488 IPR015963 GO:0005737|GO:0006221|GO:0033862
Trre2g02463 494 SUPERFAMILY Carbamate kinase-like 254 487 IPR036393 -
Trre2g02463 494 Coils Coil 156 183 - -
Trre2g02463 494 Gene3D - 116 179 - -
Trre2g02463 494 PANTHER URIDYLATE KINASE 109 493 - -
Trre2g02463 494 MobiDBLite consensus disorder prediction 29 44 - -
Trre2g02463 494 FunFam Aspartate/glutamate/uridylate kinase family protein 116 179 - -
Trre2g02463 494 Pfam Amino acid kinase family 257 467 IPR001048 -
Trre2g02463 494 CDD AAK_UMPK-PyrH-Ec 256 488 IPR015963 GO:0005737|GO:0006221|GO:0033862
Trre2g02463 494 Pfam Myb/SANT-like DNA-binding domain 113 203 IPR044822 -
Trre2g02463 494 MobiDBLite consensus disorder prediction 29 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02463 Trre-Chr2 20907873 20912112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02463 94 207 Trihelix Transcription Factor Family AT3G14180 34.146 3.92e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g02463 AA_kinase 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02463 - - gmx:100805176 780.4