Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02462 ATGATGAATTGTGCCATCATGTTCTTCTTCTTCTTCCTCTTCTTAGGCATCTACATTGTACCGTGTCTAACATATAATGACACTCATGCACTTACTCTCTTCCGCCAACAAACAGACATACATGGCCAACTTCTCACCAATTGGACCGGAACAGACGCATGCTCGGCCACATGGCATGGCGTCATTTGCTCCCCGAACAATCGTGTCACGTCCATCACACTTCCGTCCCTCAACCTCCGAGGACCCATTGACGCCCTCTCTCCCCTCACTCATCTCCGCCTCCTCGACCTACATAACAACCGCCTAAATGGCACTGTTTCACCCTCTCTCCTCTCTAACTGCACAAACCTCAAACTTCTCTATCTTGCCGAAAACGACTTTTCTGGTCAAATTCCTCCTGATATCTCCTCCCTGGTTAATCTCCTTCGTCTTGACCTCTCCGACAACAACCTTGCTGGTGCAATTCCCAATGAAATTTCCCGTTTAACTAGCCTTCTCACTCTGAGGCTTCAGAACAATGCACTCTCCGGTAACATTCCCGACCTCTTCTCTGCCATGCCGAATCTCACAGAGCTCAACATGACAAACAATGAATTCCATGGTCATATACCAAACTCTATGGTTAAAAAATTCGGTGATGAAAGCTTCTCCGGTAATGAAGGTTTATGTGGTTCAAAACCGTTCCAAGTTTGTACCTCCACAGAGAACAATCCTCCTTTATCTGAACCGGTTCAGACCGTCCCTTCAAACCCCAGTTCATTCCCTCAAACAAGTGTAGTCGCAAGACCAAGAAGCCAACACCGTAAAGGGTTAAGCCCCGGCACAATTGTAGCAATCGTGGTGGCAATTTGTGTTGCATTGTTAGTGGTAACATCTTTCGTTGTTGCTCAATGTTGTGCCAGAGGGAAAGGTGTTAATAGTAATTCCATAGTGGGCAGTGAGGGTGGAAACGGAAAGAGGAAGAGTTATGGTAGTGAAAAGAAGGTGTATAATGCAAATGGTCGAGCTAGTGATAGTAGTGATGAGACTAGTGGAACTGATATGAGCAAGCTTGTGTTTTTTGATAGGAGGAATGGGTTTGAATTGGAGGATTTGTTGCGTGCTTCTGCTGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGAGCAGTGCTTGATGATGGTAGCACAGTTGCTGTCAAGAGGTTAAAAGATGCAAATCCCTGTGCTAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAACACCCCAACATTGTTAGACTTAGAGCTTATTATTATGCTAAGGAAGAAAAGCTTCTTGTCTATGATTATCTCTCCAATGGAAGTTTACATTCTCTTCTTCATGGGAACCGTGGACCTGGGAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGAGCAGCAAGAGGGCTAGCTAGGATTCATACAGAGTACAGTGCAGCAAAAGTGCCACATGGGAATGTGAAATCATCCAATGTACTACTTGACAAGAATGGTGTTGCTTGCATATCTGACTTTGGTTTGTCACTACTATTAAACCCTGTTCATGCAATTGCAAGATTAGGAGGGTACAGAGCACCTGAACAGACAGAACAAAAGAGACTGTCTCAACAAGCTGATGTGTACAGTTTTGGAGTGTTGCTATTGGAAGTTCTCACAGGGAGAGCTCCTTCATTACAGTATCCTTCTCCGGGGACGGCTCGTCCTCGTAAAGATGAAGAACAAACTATGGTCGATCTTCCCAAATGGGTTCGATCAGTTGTGAGAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTTTGCGATACAAGAATATTGAGGAAGAGCTTGTGTCAATGCTACATGTTGGGTTGGCTTGTGTGGTACAGCAGCCAGAGAAGAGGCCAACTATGGTAGATGTTGTTAAGATGATTGAGGATATCAGGGTGGAGCAATCTCCTCTGTGCGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCCATTCCCACCACTGAAGATGGTCTTGCTTAG 2043 0.4488 MMNCAIMFFFFFLFLGIYIVPCLTYNDTHALTLFRQQTDIHGQLLTNWTGTDACSATWHGVICSPNNRVTSITLPSLNLRGPIDALSPLTHLRLLDLHNNRLNGTVSPSLLSNCTNLKLLYLAENDFSGQIPPDISSLVNLLRLDLSDNNLAGAIPNEISRLTSLLTLRLQNNALSGNIPDLFSAMPNLTELNMTNNEFHGHIPNSMVKKFGDESFSGNEGLCGSKPFQVCTSTENNPPLSEPVQTVPSNPSSFPQTSVVARPRSQHRKGLSPGTIVAIVVAICVALLVVTSFVVAQCCARGKGVNSNSIVGSEGGNGKRKSYGSEKKVYNANGRASDSSDETSGTDMSKLVFFDRRNGFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVRLRAYYYAKEEKLLVYDYLSNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHTEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQTEQKRLSQQADVYSFGVLLLEVLTGRAPSLQYPSPGTARPRKDEEQTMVDLPKWVRSVVREEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVQQPEKRPTMVDVVKMIEDIRVEQSPLCEDYDESRNSLSPSIPTTEDGLA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02462 680 Gene3D Phosphorylase Kinase; domain 1 336 442 - -
Trre2g02462 680 Gene3D Ribonuclease Inhibitor 109 233 IPR032675 -
Trre2g02462 680 MobiDBLite consensus disorder prediction 236 267 - -
Trre2g02462 680 SUPERFAMILY Protein kinase-like (PK-like) 371 647 IPR011009 -
Trre2g02462 680 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 443 659 - -
Trre2g02462 680 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 652 IPR046959 -
Trre2g02462 680 MobiDBLite consensus disorder prediction 309 346 - -
Trre2g02462 680 MobiDBLite consensus disorder prediction 332 346 - -
Trre2g02462 680 FunFam Leucine-rich repeat receptor-like kinase 26 134 - -
Trre2g02462 680 Pfam Protein kinase domain 371 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02462 680 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Trre2g02462 680 MobiDBLite consensus disorder prediction 661 680 - -
Trre2g02462 680 FunFam pollen receptor-like kinase 1 337 442 - -
Trre2g02462 680 Gene3D Transferase(Phosphotransferase) domain 1 443 668 - -
Trre2g02462 680 SMART LRR_typ_2 89 113 IPR003591 -
Trre2g02462 680 SMART LRR_typ_2 162 185 IPR003591 -
Trre2g02462 680 SMART LRR_typ_2 138 161 IPR003591 -
Trre2g02462 680 SMART LRR_typ_2 186 210 IPR003591 -
Trre2g02462 680 Gene3D Ribonuclease Inhibitor 24 108 IPR032675 -
Trre2g02462 680 MobiDBLite consensus disorder prediction 236 263 - -
Trre2g02462 680 FunFam Leucine-rich repeat receptor-like protein kinase 140 233 - -
Trre2g02462 680 ProSiteProfiles Protein kinase domain profile. 367 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02462 680 SUPERFAMILY L domain-like 24 208 - -
Trre2g02462 680 CDD STKc_IRAK 373 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02462 Trre-Chr2 20904228 20906714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02462 23 676 Receptor kinase-like Gene Family AT2G36570 67.262 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre2g02462 Pkinase 2.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02462 - - gmx:102660494 967.607