Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02454 ATGGAAGAAGAAACTTTCCAAAACAACAACAACAACAACAATGTTTCTTCTACAGAATCACCTCAACAACAACAACTAGTTTCAAACTCATTTCCTCAAGTAATGAACATGAACATGAACATTAACACAACAAGTCTTGTCAACACTGTTGTTCCTCCAGTAACATCAATGGTTCCTCAAGTAACATCAACAGTGACAACAACAACAACAACAACAACACCAACAGGAAACAGTGGTGGAACAAGTTTAGATTTGTTTGGTAAAAAGAAAAGAGGTAGACCAAGAAAATATGATGCAGATGGAAACCTAAATCCAAGTTACAAAAAAGAAAAACCACCAACACTAACATCTCCAACATCACCACCACCAGGATTCACTTTGTCTACAAATGACTTTTCCTCTAAAAAGGGTCGTGGCAAACCAACTGCCTTTGGAAATTACCAAACCCTTTCTTCTTTTGGTGAAGTGTTTTCAAGCACAGCTGCTGTGGATTTTACACCCCATGTGGTCACAGTTTATACAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGGAGGAATATGCATTCTTTCTGCCAATGGTGCTATCTCTAAAGTTGCATTACGTCAACTTGGTTCTTCTGGTGGTGACATTTTGACTTATGAGGGTCGATTTGAGATTTTATCTTTGTCCGGATCATACACTCTCTCTGACAATAGTGGCATGAGAACTCGAGAGGGTGGATTGAGTGTCTCACTAGCTGGTCCTGATGGTCGAGTGATCGGAGGTGCTGTTGCTGGTCTTCTTACAGCTGCTGGTCCCATCCAAATTATAGTGGGGAGCTTCATGACAAATGGACATGGTTACAACAAGACCCTTAAAAAGAAATACCAACGCGAACAAATAGCGGTCTCTCCAACTGGTCCAGAAGCAGCGATAGCAGCAAGACCTATCTCACAAGCAAATACTCATGGCGAAAACTTTATGATACCTATTATGTCTCATCAGTTACAAGATCAAATCCAGAGAGAATGTGCAAGTGTTTCAACTGATCCTGATGCTGCTAATTGGAATGGTTCCGATGAATTTTCTGATCAAAGGACATCCCCTGACATCAATATTTCTTTGGCTGATGAATAG 1140 0.4061 MEEETFQNNNNNNNVSSTESPQQQQLVSNSFPQVMNMNMNINTTSLVNTVVPPVTSMVPQVTSTVTTTTTTTTPTGNSGGTSLDLFGKKKRGRPRKYDADGNLNPSYKKEKPPTLTSPTSPPPGFTLSTNDFSSKKGRGKPTAFGNYQTLSSFGEVFSSTAAVDFTPHVVTVYTGEDVGGKILSFAQKSPRGGICILSANGAISKVALRQLGSSGGDILTYEGRFEILSLSGSYTLSDNSGMRTREGGLSVSLAGPDGRVIGGAVAGLLTAAGPIQIIVGSFMTNGHGYNKTLKKKYQREQIAVSPTGPEAAIAARPISQANTHGENFMIPIMSHQLQDQIQRECASVSTDPDAANWNGSDEFSDQRTSPDINISLADE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02454 379 MobiDBLite consensus disorder prediction 349 379 - -
Trre2g02454 379 MobiDBLite consensus disorder prediction 62 140 - -
Trre2g02454 379 MobiDBLite consensus disorder prediction 349 373 - -
Trre2g02454 379 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 344 IPR039605 GO:0003680
Trre2g02454 379 MobiDBLite consensus disorder prediction 86 105 - -
Trre2g02454 379 CDD DUF296 166 282 IPR005175 -
Trre2g02454 379 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 282 IPR005175 -
Trre2g02454 379 ProSiteProfiles PPC domain profile profile. 162 310 IPR005175 -
Trre2g02454 379 MobiDBLite consensus disorder prediction 1 25 - -
Trre2g02454 379 MobiDBLite consensus disorder prediction 121 136 - -
Trre2g02454 379 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 284 - -
Trre2g02454 379 MobiDBLite consensus disorder prediction 62 82 - -
Trre2g02454 379 Gene3D - 167 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02454 Trre-Chr2 20753243 20756698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02454 88 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.770 3.13e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02454 - - gmx:100779227 389.423