Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02439 ATGACAACTGATCTAAGACAACTAGTAAACGGAACAAGGTCAACCCATTTTCCGTCTATACCGGCTACCGCGGAAGATTTTTTCCCCGGTCACCGGAATCTAACTGCTTTGTTAACTAATACACATCAACAAAATGAACAACAACAACAGTATGAGATGAATCAGATGATGATGTTGGGTCGTGGAGTTGTACTTGAAGATTTCAATAACATCATTACTACTACCACTCATCATCATCATCATGTTCCACCACAACACCCACCACCTCCTCCAACAACAGCAACTGCTAGTGCTAGTGTTTCAACACCTGAGACCACAGGATGTATCGGTGGAGATGCATCCACTGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCTTTATGGGATGAAGTTTCTAGGATAATGTCTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAGTGCAGGGAGAAATTTGAGAATCTATACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGACATGATGGGAAACATTATAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACTTCAACAATTTCCAAAACCCTTCAAAAAATACAAATCAAGACAATAGTCTCAGTCTTACTAACTCAACTGACTTTGATACTTCATCATCTGATGATGAGAATGATGATGAGAAGGGAAAGAAGAAGAGTAGTAGAAGGAGGAGTTGGAAGGTTAAGATAAAAGAGTTTATTGATTCACAAATGAAGAAGCTTGTTGAGAAGCAAGAAGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGAGAAGGAAAATGAGAGAGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGTAAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGAATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGAGGAAGAGAAATGAAGGTTGAAGTTGAACATGAAGCTCATGAACATAACAAGGGTATAAGTGTAATAAATGAAGCTGAGATAATTCATCAAAACAACTTTGAAAACCAAAATGAAGATGGGAGTGAAATCTTGAATAGTAATGTGAGAGGTTCTGATAACTATCCAAGAGATTCTTCAAAAGAAGGAAACAAGAAGAGAAAGGAGAATTTTTACTTCAACAATAATGAACAATGTTCTATGTACACTCAAGGAAGTAGTTATTGTGATGTGAATGATCAAAGAGAGGAGATTGTTAAGCTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCTTGCTTAATGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAAATCAATAAATCAAACCAAAACCATTGA 1500 0.3713 MTTDLRQLVNGTRSTHFPSIPATAEDFFPGHRNLTALLTNTHQQNEQQQQYEMNQMMMLGRGVVLEDFNNIITTTTHHHHHVPPQHPPPPPTTATASASVSTPETTGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVNFNNFQNPSKNTNQDNSLSLTNSTDFDTSSSDDENDDEKGKKKSSRRRSWKVKIKEFIDSQMKKLVEKQEEWLSKLVKTLEEKENERVLREEEWRKQEVKRVEKEQKFWSKEREWIEARDAALMEALKNIGGREMKVEVEHEAHEHNKGISVINEAEIIHQNNFENQNEDGSEILNSNVRGSDNYPRDSSKEGNKKRKENFYFNNNEQCSMYTQGSSYCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFLLNEGGNLWENFGLKINKSNQNH 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02439 499 Pfam Myb/SANT-like DNA-binding domain 117 203 IPR044822 -
Trre2g02439 499 Coils Coil 285 312 - -
Trre2g02439 499 PANTHER FI21293P1 83 359 - -
Trre2g02439 499 MobiDBLite consensus disorder prediction 386 416 - -
Trre2g02439 499 Gene3D - 118 180 - -
Trre2g02439 499 CDD GT1 117 182 - -
Trre2g02439 499 MobiDBLite consensus disorder prediction 386 403 - -
Trre2g02439 499 MobiDBLite consensus disorder prediction 95 109 - -
Trre2g02439 499 FunFam trihelix transcription factor PTL-like 118 180 - -
Trre2g02439 499 ProSiteProfiles Myb-like domain profile. 110 175 IPR001005 -
Trre2g02439 499 MobiDBLite consensus disorder prediction 75 115 - -
Trre2g02439 499 MobiDBLite consensus disorder prediction 214 264 - -
Trre2g02439 499 MobiDBLite consensus disorder prediction 214 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02439 Trre-Chr2 20473313 20476802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02439 117 401 Trihelix Transcription Factor Family AT5G03680 55.049 1.05e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g02439 Myb_DNA-bind_4 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02439 - - mtr:25483883 687.567