Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02438 ATGGATGACCACCATAACAATCATGGTCACCACCACCATCATCATCATCAACAACAACAATATGGAAGTATGACAACTGATCTAAGACAACTAGTAAACGGAACAAGGTCAACCCATTTTCCGTCTATACCGGCTACCGCGGAAGATTTTTTCCCCGGTCACCGGAATCTAACTGCTTTGTTAACTAATACACATCAACAAAATGAACAACAACAACAGTATGAGATGAATCAGATGATGATGTTGGGTCGTGGAGTTGTACTTGAAGATTTCAATAACATCATTACTACTACCACTCATCATCATCATCATGTTCCACCACAACACCCACCACCTCCTCCAACAACAGCAACTGCTAGTGCTAGTGTTTCAACACCTGAGACCACAGGATGTATCGGTGGAGATGCATCCACTGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCTTTATGGGATGAAGTTTCTAGGATAATGTCTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAGTGCAGGGAGAAATTTGAGAATCTATACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGACATGATGGGAAACATTATAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACTTCAACAATTTCCAAAACCCTTCAAAAAATACAAATCAAGACAATAGTCTCAGTCTTACTAACTCAACTGACTTTGATACTTCATCATCTGATGATGAGAATGATGATGAGAAGGGAAAGAAGAAGAGTAGTAGAAGGAGGAGTTGGAAGGTTAAGATAAAAGAGTTTATTGATTCACAAATGAAGAAGCTTGTTGAGAAGCAAGAAGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGAGAAGGAAAATGAGAGAGTGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGTAAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGAATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGAGGAAGAGAAATGAAGGTTGAAGTTGAACATGAAGCTCATGAACATAACAAGGGTATAAGTGTAATAAATGAAGCTGAGATAATTCATCAAAACAACTTTGAAAACCAAAATGAAGATGGGAGTGAAATCTTGAATAGTAATGTGAGAGGTTCTGATAACTATCCAAGAGATTCTTCAAAAGAAGGAAACAAGAAGAGAAAGGAGAATTTTTACTTCAACAATAATGAACAATGTTCTATGTACACTCAAGGAAGTAGTTATTGTGATGTGAATGATCAAAGAGAGGAGATTGTTAAGCTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCTTGCTTAATGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAAATCAATAAATCAAACCAAAACCATTGA 1569 0.3728 MDDHHNNHGHHHHHHHQQQQYGSMTTDLRQLVNGTRSTHFPSIPATAEDFFPGHRNLTALLTNTHQQNEQQQQYEMNQMMMLGRGVVLEDFNNIITTTTHHHHHVPPQHPPPPPTTATASASVSTPETTGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVNFNNFQNPSKNTNQDNSLSLTNSTDFDTSSSDDENDDEKGKKKSSRRRSWKVKIKEFIDSQMKKLVEKQEEWLSKLVKTLEEKENERVLREEEWRKQEVKRVEKEQKFWSKEREWIEARDAALMEALKNIGGREMKVEVEHEAHEHNKGISVINEAEIIHQNNFENQNEDGSEILNSNVRGSDNYPRDSSKEGNKKRKENFYFNNNEQCSMYTQGSSYCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFLLNEGGNLWENFGLKINKSNQNH 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02438 522 MobiDBLite consensus disorder prediction 237 287 - -
Trre2g02438 522 MobiDBLite consensus disorder prediction 118 132 - -
Trre2g02438 522 PANTHER FI21293P1 106 382 - -
Trre2g02438 522 Pfam Myb/SANT-like DNA-binding domain 140 226 IPR044822 -
Trre2g02438 522 CDD GT1 140 205 - -
Trre2g02438 522 MobiDBLite consensus disorder prediction 237 270 - -
Trre2g02438 522 Gene3D - 141 203 - -
Trre2g02438 522 MobiDBLite consensus disorder prediction 409 426 - -
Trre2g02438 522 MobiDBLite consensus disorder prediction 1 24 - -
Trre2g02438 522 ProSiteProfiles Myb-like domain profile. 133 198 IPR001005 -
Trre2g02438 522 MobiDBLite consensus disorder prediction 409 440 - -
Trre2g02438 522 MobiDBLite consensus disorder prediction 98 138 - -
Trre2g02438 522 FunFam trihelix transcription factor PTL-like 141 203 - -
Trre2g02438 522 Coils Coil 308 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02438 Trre-Chr2 20473244 20476802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02438 140 424 Trihelix Transcription Factor Family AT5G03680 55.049 1.06e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre2g02438 Myb_DNA-bind_4 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02438 - - mtr:25483883 699.123