Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02434 ATGGACTTTAGAAAATCAAAATCGGTCTTCCACTGCATCTCTACAAGGGAGCTCAATTCTTTTCCAGTTCGGAAACGGCCTGCAACTGTCTTCAATGAGATTGGAGCTATAGATGCACGGTACATTAGCGACGCGGATCTGTGGTATGTGCCCTGCGCTATCTCCTTCAGTAAGAGTATAAAACATTCTTACGACCTTGCTGTTGCTGATGACGATGGCTACGTTCACTTGTTTAATACTCGAAGCAGAAGTATGGTTGACGAATGGAGACCGCACGAAGATACTATTTTGGATGTCTGTTGGCTTAAGGAAGATACTCGAATTGTCACTGCTTCTTGTGATGAAACTGTGAAAGTATGGGATGTTGAACAAAAGGCGTGTCTCAGAGAGCTAAGGGCGCACGAGGACAGGGTTGAAACTATTTGTTCTCATCCTACTAGTGATGATATAATTGTCTCTGGTTCAAGTGATGGATCCTTTTGTCTTTGGGACTTAAGATGCAATTCAATTACTGTTAAAGGAAATGCACACCGTCATGTTAAATACGGACAAGTAAGGAGGAGCAGGGTTGAAACCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGGTGGATCAAAAGATAGTGTGCCAAAAATTTGGGATATCAGATATTTGAATCTTGATGTCTCACCTATAGGTCCTCTTCCTCAGCCAGCAGGACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACCGTGGAGTTTTACTCTCAGCCTCCTGCAAGGATAGCCGAATTTATCTATATAATACACTTCAACTTGAAAGGGGGCCTTTAAGATCCTATGAAGCTGGTAGTTTAAGATCTTATATGAAGGCTGCAATTAGCCCTGATGCATTGAACATAGCTAGCGGTTCTGAAGAAGGAAATATATATATTTCGAAGGTCAACAATCCTCAAGAACAACCTACAATTTTGTTCCCGAGCGAAGATGAAAACGTGTCCTTAGTTGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCGACTGCTGGTGAAAATATAGTTCGAATATGGGATCAAGAACATCGAGATATGGAATAA 1107 0.4155 MDFRKSKSVFHCISTRELNSFPVRKRPATVFNEIGAIDARYISDADLWYVPCAISFSKSIKHSYDLAVADDDGYVHLFNTRSRSMVDEWRPHEDTILDVCWLKEDTRIVTASCDETVKVWDVEQKACLRELRAHEDRVETICSHPTSDDIIVSGSSDGSFCLWDLRCNSITVKGNAHRHVKYGQVRRSRVETMKITSVLWLKDQVSIATGGSKDSVPKIWDIRYLNLDVSPIGPLPQPAGQQRLEGITSLSQDDRGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSYMKAAISPDALNIASGSEEGNIYISKVNNPQEQPTILFPSEDENVSLVDWSFSEFGKLATAGENIVRIWDQEHRDME 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02434 368 SMART WD40_4 322 361 IPR001680 GO:0005515
Trre2g02434 368 SMART WD40_4 277 317 IPR001680 GO:0005515
Trre2g02434 368 SMART WD40_4 181 221 IPR001680 GO:0005515
Trre2g02434 368 SMART WD40_4 82 121 IPR001680 GO:0005515
Trre2g02434 368 SMART WD40_4 237 272 IPR001680 GO:0005515
Trre2g02434 368 SMART WD40_4 124 164 IPR001680 GO:0005515
Trre2g02434 368 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Trre2g02434 368 Gene3D - 182 362 IPR015943 GO:0005515
Trre2g02434 368 Gene3D - 49 171 IPR015943 GO:0005515
Trre2g02434 368 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Trre2g02434 368 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Trre2g02434 368 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Trre2g02434 368 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 166 - -
Trre2g02434 368 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 173 IPR001680 GO:0005515
Trre2g02434 368 SUPERFAMILY WD40 repeat-like 51 363 IPR036322 GO:0005515
Trre2g02434 368 Pfam WD domain, G-beta repeat 89 121 IPR001680 GO:0005515
Trre2g02434 368 Pfam WD domain, G-beta repeat 126 164 IPR001680 GO:0005515
Trre2g02434 368 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 123 - -
Trre2g02434 368 ProSitePatterns Trp-Asp (WD) repeats signature. 108 122 IPR019775 -
Trre2g02434 368 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 27 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02434 Trre-Chr2 20445171 20447948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02434 57 265 U-box Gene Family AT2G33340 25.688 3.18e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02434 K11790 - tpra:123887452 428.713