Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02433 ATGGACTTTAGAAAATCAAAATCGGTCTTCCACTGCATCTCTACAAGGGAGCTCAATTCTTTTCCAGTTCGGAAACGGCCTGCAACTGTCTTCAATGAGATTGGAGCTATAGATGCACGGTACATTAGCGACGCGGATCTGTGGTATGTGCCCTGCGCTATCTCCTTCAGTAAGAGTATAAAACATTCTTACGACCTTGCTGTTGCTGATGACGATGGCTACGTTCACTTGTTTAATACTCGAAGCAGAAGTATGGTTGACGAATGGAGACCGCACGAAGATACTATTTTGGATGTCTGTTGGCTTAAGGAAGATACTCGAATTGTCACTGCTTCTTGTGATGAAACTGTGAAAGTATGGGATGTTGAACAAAAGGCGTGTCTCAGAGAGCTAAGGGCGCACGAGGACAGGGTTGAAACTATTTGTTCTCATCCTACTAGTGATGATATAATTGTCTCTGGTTCAAGTGATGGATCCTTTTGTCTTTGGGACTTAAGATGCAATTCAATTACTGTTAAAGGAAATGCACACCGTCATGTTAAATACGGACAAGTTGAAACCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGGTGGATCAAAAGATAGTGTGCCAAAAATTTGGGATATCAGATATTTGAATCTTGATGTCTCACCTATAGGTCCTCTTCCTCAGCCAGCAGGACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACCGTGGAGTTTTACTCTCAGCCTCCTGCAAGGATAGCCGAATTTATCTATATAATACACTTCAACTTGAAAGGGGGCCTTTAAGATCCTATGAAGCTGGTAGTTTAAGATCTTATATGAAGGCTGCAATTAGCCCTGATGCATTGAACATAGCTAGCGGTTCTGAAGAAGGAAATATATATATTTCGAAGGTCAACAATCCTCAAGAACAACCTACAATTTTGTTCCCGAGCGAAGATGAAAACGTGTCCTTAGTTGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCGACTGCTGGTGAAAATATAGTTCGAATATGGGATCAAGAACATCGAGATATGGAATAA 1092 0.413 MDFRKSKSVFHCISTRELNSFPVRKRPATVFNEIGAIDARYISDADLWYVPCAISFSKSIKHSYDLAVADDDGYVHLFNTRSRSMVDEWRPHEDTILDVCWLKEDTRIVTASCDETVKVWDVEQKACLRELRAHEDRVETICSHPTSDDIIVSGSSDGSFCLWDLRCNSITVKGNAHRHVKYGQVETMKITSVLWLKDQVSIATGGSKDSVPKIWDIRYLNLDVSPIGPLPQPAGQQRLEGITSLSQDDRGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSYMKAAISPDALNIASGSEEGNIYISKVNNPQEQPTILFPSEDENVSLVDWSFSEFGKLATAGENIVRIWDQEHRDME 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02433 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 166 - -
Trre2g02433 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 173 IPR001680 GO:0005515
Trre2g02433 363 Gene3D - 228 357 IPR015943 GO:0005515
Trre2g02433 363 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 27 359 - -
Trre2g02433 363 Gene3D - 123 227 IPR015943 GO:0005515
Trre2g02433 363 ProSitePatterns Trp-Asp (WD) repeats signature. 108 122 IPR019775 -
Trre2g02433 363 Pfam WD domain, G-beta repeat 89 121 IPR001680 GO:0005515
Trre2g02433 363 Pfam WD domain, G-beta repeat 126 164 IPR001680 GO:0005515
Trre2g02433 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Trre2g02433 363 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Trre2g02433 363 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Trre2g02433 363 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Trre2g02433 363 SMART WD40_4 232 267 IPR001680 GO:0005515
Trre2g02433 363 SMART WD40_4 317 356 IPR001680 GO:0005515
Trre2g02433 363 SMART WD40_4 272 312 IPR001680 GO:0005515
Trre2g02433 363 SMART WD40_4 82 121 IPR001680 GO:0005515
Trre2g02433 363 SMART WD40_4 176 216 IPR001680 GO:0005515
Trre2g02433 363 SMART WD40_4 124 164 IPR001680 GO:0005515
Trre2g02433 363 Gene3D - 5 122 IPR015943 GO:0005515
Trre2g02433 363 SUPERFAMILY WD40 repeat-like 51 358 IPR036322 GO:0005515
Trre2g02433 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02433 Trre-Chr2 20445171 20447948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02433 57 260 U-box Gene Family AT2G33340 26.291 8.94e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02433 K11790 - tpra:123887452 434.876