Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02432 ATGGACTATAGAAAACCAAAATCGCTCCTCCACAGCATCGCTTCAAGGGAACTCAATTCCTTTCCAGTTCGTAGACGGCCTGAAACAATCTTCAATGAAATTGGAGCTATAAATGCACGGCGCTATAGCGACTCAGAACACCGGAATTTGGCCTATATACCCTGCGCTCTCTCCTTCAGTAAGAGTTTAAAACATTCTTACGACCTTGCTGTAGCTGATGACGATGGCTACGTTCACTTGTTTAACACTCGAAGCAGAAATATGATTAGCGAATGGAGACAGCACAAAGATACTGTTTTTGATGTCTGTTGGCTTAAGGAAGATACTCGAATTGTCACTGCTTCTTGGGATGAAAGTGTGAAAATATGGGATGTTGAACAAAAGACGTGTCTCAGAAAGCTATGGGAGCACAAGGACGGGGTTGAAACTGTTTGTTCTCATCCTACTAATGATGATATAATTGTCTCTGGTTCAAACGATGGATCCTTTCGTCTTTGGGACTTAAGATGCAATTCGAGTACTGCTGTTGTTGATGCACACCTTTATGATAGATACGGAGTGGTTGAAGCCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGGTGGATCCAAAGATAGTGTGCCAAAAATTTGGGATATCAGAAATTTGAATCGCGATGTCTCACCTATAGGTTCTCTTCCTCAGCCAGCAGAACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACAGTGGCGTTTTACTCTCGGCCTCCTGCAAGGATAGCCGAATTTATCTATATAACACACTTCAACTTGAAAGGGGGCCTTTAAGATCCTACGAAGCTGGTAGTTTAAGATCTTATAATAAGGCTGCAATCAGCCCTGATGCATTGAACATAGCAAGCGGTTCAGTTGAAGGAAATATATATATTTCGCAGGTCAACAATCCTCAAGAACAACCTACTATTTTGTCGGCGAGGGAACACGAAAATGCATTCTTAGTGGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCAACTGCTGGTGAACACATAGTTCAAATATGGGATAAAGAACGTCGACCACGTCCGGATATGATAGAAAGAAGTTAA 1119 0.4191 MDYRKPKSLLHSIASRELNSFPVRRRPETIFNEIGAINARRYSDSEHRNLAYIPCALSFSKSLKHSYDLAVADDDGYVHLFNTRSRNMISEWRQHKDTVFDVCWLKEDTRIVTASWDESVKIWDVEQKTCLRKLWEHKDGVETVCSHPTNDDIIVSGSNDGSFRLWDLRCNSSTAVVDAHLYDRYGVVEAMKITSVLWLKDQVSIATGGSKDSVPKIWDIRNLNRDVSPIGSLPQPAEQQRLEGITSLSQDDSGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSYNKAAISPDALNIASGSVEGNIYISQVNNPQEQPTILSAREHENAFLVDWSFSEFGKLATAGEHIVQIWDKERRPRPDMIERS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02432 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Trre2g02432 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 176 IPR001680 GO:0005515
Trre2g02432 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 126 - -
Trre2g02432 372 Gene3D - 22 180 IPR015943 GO:0005515
Trre2g02432 372 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Trre2g02432 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 169 - -
Trre2g02432 372 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 362 - -
Trre2g02432 372 SUPERFAMILY WD40 repeat-like 54 362 IPR036322 GO:0005515
Trre2g02432 372 Pfam WD domain, G-beta repeat 89 124 IPR001680 GO:0005515
Trre2g02432 372 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Trre2g02432 372 SMART WD40_4 235 270 IPR001680 GO:0005515
Trre2g02432 372 SMART WD40_4 127 167 IPR001680 GO:0005515
Trre2g02432 372 SMART WD40_4 85 124 IPR001680 GO:0005515
Trre2g02432 372 SMART WD40_4 319 359 IPR001680 GO:0005515
Trre2g02432 372 SMART WD40_4 275 315 IPR001680 GO:0005515
Trre2g02432 372 SMART WD40_4 170 219 IPR001680 GO:0005515
Trre2g02432 372 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Trre2g02432 372 PRINTS G protein beta WD-40 repeat signature 111 125 IPR020472 -
Trre2g02432 372 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Trre2g02432 372 Gene3D - 181 370 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02432 Trre-Chr2 20440132 20443251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02432 60 263 U-box Gene Family AT2G33340 27.570 2.17e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02432 K11790 - tpra:123887452 409.068