Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02431 ATGGACTATAGAAAACCAAAATCGCTCCTCCACAGCATCGCTTCAAGGGAACTCAATTCCTTTCCAGTTCGTAGACGGCCTGAAACAATCTTCAATGAAATTGGAGCTATAAATGCACGGCGCTATAGCGACTCAGAACACCGGAATTTGGCCTATATACCCTGCGCTCTCTCCTTCAGTAAGAGTTTAAAACATTCTTACGACCTTGCTGTAGCTGATGACGATGGCTACGTTCACTTGTTTAACACTCGAAGCAGAAATATGATTAGCGAATGGAGACAGCACAAAGATACTGTTTTTGATGTCTGTTGGCTTAAGGAAGATACTCGAATTGTCACTGCTTCTTGGGATGAAAGTGTGAAAATATGGGATGTTGAACAAAAGACGTGTCTCAGAAAGCTATGGGAGCACAAGGACGGGGTTGAAACTGTTTGTTCTCATCCTACTAATGATGATATAATTGTCTCTGGTTCAAACGATGGATCCTTTCGTCTTTGGGACTTAAGATGCAATTCGAGTACTGCTGTTGTTGATGCACACCTTTATGATAGATACGGAGTGGTAAGGAGGAGCAGGGTTGAAGCCATGAAAATTACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTGGTGGATCCAAAGATAGTGTGCCAAAAATTTGGGATATCAGAAATTTGAATCGCGATGTCTCACCTATAGGTTCTCTTCCTCAGCCAGCAGAACAGCAAAGATTAGAGGGTATAACTAGCTTGTCTCAAGATGACAGTGGCGTTTTACTCTCGGCCTCCTGCAAGGATAGCCGAATTTATCTATATAACACACTTCAACTTGAAAGGGGGCCTTTAAGATCCTACGAAGCTGGTAGTTTAAGATCTTATAATAAGGCTGCAATCAGCCCTGATGCATTGAACATAGCAAGCGGTTCAGTTGAAGGAAATATATATATTTCGCAGGTCAACAATCCTCAAGAACAACCTACTATTTTGTCGGCGAGGGAACACGAAAATGCATTCTTAGTGGACTGGTCCTTCTCCGAGTTTGGAAAATTAGCAACTGCTGGTGAACACATAGTTCAAATATGGGATAAAGAACGTCGACCACGTCCGGATATGATAGAAAGAAGTTAA 1134 0.4215 MDYRKPKSLLHSIASRELNSFPVRRRPETIFNEIGAINARRYSDSEHRNLAYIPCALSFSKSLKHSYDLAVADDDGYVHLFNTRSRNMISEWRQHKDTVFDVCWLKEDTRIVTASWDESVKIWDVEQKTCLRKLWEHKDGVETVCSHPTNDDIIVSGSNDGSFRLWDLRCNSSTAVVDAHLYDRYGVVRRSRVEAMKITSVLWLKDQVSIATGGSKDSVPKIWDIRNLNRDVSPIGSLPQPAEQQRLEGITSLSQDDSGVLLSASCKDSRIYLYNTLQLERGPLRSYEAGSLRSYNKAAISPDALNIASGSVEGNIYISQVNNPQEQPTILSAREHENAFLVDWSFSEFGKLATAGEHIVQIWDKERRPRPDMIERS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02431 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Trre2g02431 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 176 IPR001680 GO:0005515
Trre2g02431 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 92 126 - -
Trre2g02431 377 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Trre2g02431 377 Pfam WD domain, G-beta repeat 89 124 IPR001680 GO:0005515
Trre2g02431 377 ProSitePatterns Trp-Asp (WD) repeats signature. 111 125 IPR019775 -
Trre2g02431 377 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 367 - -
Trre2g02431 377 Gene3D - 239 371 IPR015943 GO:0005515
Trre2g02431 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 169 - -
Trre2g02431 377 SUPERFAMILY WD40 repeat-like 54 367 IPR036322 GO:0005515
Trre2g02431 377 SMART WD40_4 184 224 IPR001680 GO:0005515
Trre2g02431 377 SMART WD40_4 324 364 IPR001680 GO:0005515
Trre2g02431 377 SMART WD40_4 127 167 IPR001680 GO:0005515
Trre2g02431 377 SMART WD40_4 280 320 IPR001680 GO:0005515
Trre2g02431 377 SMART WD40_4 85 124 IPR001680 GO:0005515
Trre2g02431 377 SMART WD40_4 240 275 IPR001680 GO:0005515
Trre2g02431 377 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Trre2g02431 377 PRINTS G protein beta WD-40 repeat signature 111 125 IPR020472 -
Trre2g02431 377 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Trre2g02431 377 Gene3D - 39 238 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02431 Trre-Chr2 20440132 20443251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02431 60 268 U-box Gene Family AT2G33340 26.267 5.06e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02431 K11790 - tpra:123887452 404.06