Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02430 ATGAATAAAAGAAGAGCAGGAAGGAAGAAATTCCATGAGACTCGACATCCAATTTACAAAGGAGTGAGACAAAGAAATGGAAAATGGCTGTGTGAGATACGTCAACCTAACAACAAAACTCGTGTTTGGCTTGGAACATTTTCTCACCCGGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTAGCTTTTAAAGGTCTATTCAGTTTCCCGCGACAAAAGCAGCCGAAAAACATTTTTCTCCATGTCAGGATTCAGAATCATTCGTTGCGGAGATTACAAAGAATGATTCAGAATCTTCGGAAAAGTCTTTTTCAGAAAGCCTTTTTTGGGATGAGGAGGAGGTTTTCAACATGCCGGGATTGA 366 0.4044 MNKRRAGRKKFHETRHPIYKGVRQRNGKWLCEIRQPNNKTRVWLGTFSHPDMAAIAYDVAALAFKGLFSFPRQKQPKNIFLHVRIQNHSLRRLQRMIQNLRKSLFQKAFFGMRRRFSTCRD 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02430 121 SUPERFAMILY DNA-binding domain 18 68 IPR016177 GO:0003677
Trre2g02430 121 SMART rav1_2 18 77 IPR001471 GO:0003700|GO:0006355
Trre2g02430 121 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 66 IPR045277 GO:0003700
Trre2g02430 121 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Trre2g02430 121 Gene3D AP2/ERF domain 18 72 IPR036955 GO:0003700|GO:0006355
Trre2g02430 121 CDD AP2 17 66 IPR001471 GO:0003700|GO:0006355
Trre2g02430 121 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02430 Trre-Chr2 20386579 20387020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02430 3 66 AP2-EREBP Transcription Factor Family AT5G51990 72.308 5.67e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02430 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02430 - - aprc:113870892 132.109