Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02420 ATGAAGGTTGTTGCTGCCTATTTGCTTGCCGTTCTTGGAGGCAACGACACCCCCTCCGCCAAAACCATCAAAGACATCCTTGGCTCAGTTGGAGCAGAAGCAGAAGATGATAGGATTGAGTTGTTTTTGTCCGAAATTAAGGGGAAAGATTTAGCTGAGGTTATTGCATCTGGTAGGGAAAAGTTGGCATCAGTTCCTTCTGGTGGTGGTGTTGCTGTTGCCGCTGCACCTGCAAGTGGTGGTGGTGCTGCTCCTGCAGCTGCTGAGGCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAATCTGACGATGATATGGGTTTCAGTCTTTTTGATTAA 339 0.4808 MKVVAAYLLAVLGGNDTPSAKTIKDILGSVGAEAEDDRIELFLSEIKGKDLAEVIASGREKLASVPSGGGVAVAAAPASGGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02420 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Trre2g02420 112 FunFam 60S acidic ribosomal protein P2 1 59 - -
Trre2g02420 112 Pfam 60s Acidic ribosomal protein 18 111 - -
Trre2g02420 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trre2g02420 112 Gene3D - 1 59 IPR038716 -
Trre2g02420 112 MobiDBLite consensus disorder prediction 76 112 - -
Trre2g02420 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02420 Trre-Chr2 20250441 20251930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02420 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 71.429 6.83e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02420 K02943 - aof:109825870 125.176