Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02413 ATGCGATTCCTCTCCTACTCCACAATCATCTCCGGTCTCCGCCTCACCAACGGCGCCACCACATCCAAACTTAACCACTTCCTCACTGCTCCATGGTTTGAAGAAGATAGAGAAAGAGCGTGTTACAGATCTGAACGGAATAGAGCTAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAGTCAATTGCTCGGCTTACACCTAACCTGGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTAGAAGCAGCTATCCAAGATACAACTTCTCAAGCCAATTCAATCCTTTTTGTCTATCGTAACATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAACAAAACTTGATGCAGACAAGAAGGAATCTAGAAGGTTACTAGCAGAATTGGATAACGTTAAGGTCCGGTTGCCGGTGCGTCTAGCTTGGTATCATCTCTGTTGA 486 0.428 MRFLSYSTIISGLRLTNGATTSKLNHFLTAPWFEEDRERACYRSERNRAKKEAEECRQKLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQDTTSQANSILFVYRNILEQYEDRQRQIEDLATKLDADKKESRRLLAELDNVKVRLPVRLAWYHLC 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02413 161 Coils Coil 109 143 - -
Trre2g02413 161 Coils Coil 39 66 - -
Trre2g02413 161 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 43 150 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02413 Trre-Chr2 20140403 20143668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02413 50 148 Structural Maintenance of Chromosomes family AT5G15920 54.545 1.28e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02413 K22803 - gmx:100778678 159.844