Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02376 ATGCCAATCACATATTCATATTCACTCTCAATTTCATCATCATCATCATCCTTTCTACCAAAGCTAAACCCAAACCTCCGTCCAATCCAATTCCGAACCAAACAACATAACCGCCAATTCCCGAACCTAAAAATCCAAAACTCCTCCACCCGAACCAACAACACCAACACTATACAGTTTCTAAAACCGTATCTAATTTCCCACCAAAAACCAATCCTCTTCGGTTGGCTCTGTAGTGCTATCTCCGTTTACTCTCTCTCTAACATCCTCTCCAAATTCTCCGCCATCACCACCGCCACAACAACCGTCCACGTCACACAAGGATTCTCTCTCGGCGGTTTGGTTCTTGTTCGATTGATTGCCACGTATGCACAACATGCGCTTCTTTGGGAAGCTTCTCTCAACGCGGTTTACGACGTTCGCGTTCACGTTTTCGATCGTGTTCTCAATAGGGAACTTGCGTTTTTTGAAGCTAACGACGCCGTTTCCACCGGTGATATTGCTTATCGAATCACTGCTGAAGCTTCCGATCTTGCTGTTACCTTATACGCTCTTCTTAATACCATAGTACCTAGTACTCTGCAATTGTCTGCAATGATAATGCATATGTTGGTTATAAGTCCTTCCCTTTCTTTGATTTCAGCCATGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAAAGTCACATACTAGCGTTGCTGCTCTCTCAGCATATCTAAATGAGATTTTGCCTGCGATTCTCTTCGTGAAAGCGAACAACGCAGAGTTGCTTGAGAGTGTCAGGTTTAAGAGACTGGCTCTGATAGACAATACTGCAAAGTTGAACAAAAAAAGGATGAAAGCTGTCATTCCCCAGGTTATACAGGCTATTTATTTTGGAGTCCTTTCCATACTTTGTGCAGGTTCGGTGGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGACAGGGAGAACCAGCTATTGAACGCTTGTTTGCTATGACCCAGTTCAAAAATAAGGTTGTTGAAAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGAGTTGAAATTCTGTAGTGTCTCCTTTAAGTATAATGATGGTCTGCCTCTTATCTTAAATGAATTGAATCTCCACGTTCGGCCTGGAGAGATAGTTGCTATCGTCGGTCCTTCTGGGGGAGGGAAAACAACACTTGCAAAACTGTTGCTTCGCCTTTATGATCCTATATCTGGGGCTATACTGATTGATAACCAAAACACCCAAAACATTAGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGAACGGTTGCTGAAAACATTGGTTATAGGGATCTAACAACAAAAATTGACATGGAGAGAGTTAAGCAGGTAGCTCAAACTGCTTATGCTGATGAGTTTATCAGAAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGATCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCACGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAAGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTAATGGAAAACCGTACGGTGCTTGTAATCTCACATCGCTTGGAAACCGTTATGATGGCTAAACGAATATTCCTTTTAGATAATGGAAAGCTAGAAGAGCTGCCTCGATCAACTATGTTGGACGGTCATATGGATTCATTGCTATCATCTGGGCGTATCGTTTGA 1875 0.416 MPITYSYSLSISSSSSSFLPKLNPNLRPIQFRTKQHNRQFPNLKIQNSSTRTNNTNTIQFLKPYLISHQKPILFGWLCSAISVYSLSNILSKFSAITTATTTVHVTQGFSLGGLVLVRLIATYAQHALLWEASLNAVYDVRVHVFDRVLNRELAFFEANDAVSTGDIAYRITAEASDLAVTLYALLNTIVPSTLQLSAMIMHMLVISPSLSLISAMVIPCMVLVVAFLGQELRKISKKSHTSVAALSAYLNEILPAILFVKANNAELLESVRFKRLALIDNTAKLNKKRMKAVIPQVIQAIYFGVLSILCAGSVVISRGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTQFKNKVVEKPDAVDLDHVTGELKFCSVSFKYNDGLPLILNELNLHVRPGEIVAIVGPSGGGKTTLAKLLLRLYDPISGAILIDNQNTQNISLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKQVAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLDGHMDSLLSSGRIV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02376 624 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 77 352 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre2g02376 624 Pfam ABC transporter 403 554 IPR003439 GO:0005524
Trre2g02376 624 Gene3D - 375 621 IPR027417 -
Trre2g02376 624 FunFam ABC transporter related 59 366 - -
Trre2g02376 624 ProSitePatterns ABC transporters family signature. 526 540 IPR017871 GO:0005524|GO:0016887
Trre2g02376 624 SUPERFAMILY ABC transporter transmembrane region 61 365 IPR036640 GO:0005524|GO:0016020
Trre2g02376 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 604 IPR027417 -
Trre2g02376 624 CDD ABC_6TM_exporters 108 360 - -
Trre2g02376 624 FunFam ABC transporter ATP-binding protein 379 620 - -
Trre2g02376 624 Gene3D ABC transporter type 1, transmembrane domain 56 365 IPR036640 GO:0005524|GO:0016020
Trre2g02376 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 386 623 IPR003439 GO:0005524
Trre2g02376 624 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 91 603 IPR039421 -
Trre2g02376 624 Pfam ABC transporter transmembrane region 79 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre2g02376 624 SMART AAA_5 412 600 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02376 Trre-Chr2 19689810 19694098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02376 140 622 Calmodulin-binding Proteins AT2G36910 30.584 4.70e-54 197