Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02360 ATGAATGCAACTCAGCAAAAAGTCTCAGAAATACATGTTTCAAGTATGAGATGCAACGATGAGGAAGAGCCCAAAGAGAGTGATGTTGATGACTATGCCGAGATTACGAATGAGAGTGAAAATACCAAACAACCCTTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCTTCTACTGCTGGTACACCTCAAGGGACAGACATTGACAAGAGAAACATTAATATGAATGTAACCCAGAAAAAAGTCGTAGGAAAAGAGGCAAATAGAAACATAGGAAGCAGCATGGATAAGAAAGTTAAGAAATGCACAAAAACTATAGATGTGAATAAGAGAAGCTGCACTGATTCTCATCCCGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCTTATGTGGAAGGTCAGAATTTAAGATTGAGGATACCTTCTTCGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAGGGAATGCGACGATTAGAAGTGTTGGTGACGACAGGACATGGAACGTGACATTAAAATTGGATGAATGCAATGGAAATTTTGAAATGAGAACCGGTTGGAAGTCATTTTCACAGTATCATAACTTGCAAGTTGGTGATGTATGTAAAGTTGCGATGACTGAAAGAGAACCACTTTCATTCACAATTACTATTATCCCAGCTACAAAGGAACCATGCCCGGAGCAGTTTCAAGAAAACCAACCAGTCCAAGAAGATATGGATTTTGTGGACAATTATGGAGAAGAAATTTCAAGGGGCTGCCCGAAAACACATGATTCTCCAAGTCCGAATCCACATTTTAAATTTGAAGTTTCTGTAACATCATTAGACAAGGTGGCCATACCAAGTGAGTTCTTGAAGAGACGCAATATATTTAATGGAAATTCGGTTGAGTTGAAAGTAGGCGAAGGAACATGGTTTGTAGAGGTGAATTATAATCAACATCTTGATTATGGGTGTTTCACTAAAGTCCCCAAAAAACCCACGCCTGCTGCTAATCCGATATATTACCGTTTAAACGTGATGGCGGATGATTCTAATGCTTCTGATGCTGCAACTCAAGCGAGGGATCCTGCTTCTGGTGGTGCAATTGAAGCGGCGAGGGATCTTGCTTCTGTGAATGTCGTGATGCCTGCTGTTCGCTCTCGATCTCTCTTTTCTTTTATGCGTGGGAACCGGAAGACTAACTAA 1197 0.3993 MNATQQKVSEIHVSSMRCNDEEEPKESDVDDYAEITNESENTKQPFKKKKINSNDSASTAGTPQGTDIDKRNINMNVTQKKVVGKEANRNIGSSMDKKVKKCTKTIDVNKRSCTDSHPDENPNFTLKLSRSYVEGQNLRLRIPSSFSKEYMNELLQGNATIRSVGDDRTWNVTLKLDECNGNFEMRTGWKSFSQYHNLQVGDVCKVAMTEREPLSFTITIIPATKEPCPEQFQENQPVQEDMDFVDNYGEEISRGCPKTHDSPSPNPHFKFEVSVTSLDKVAIPSEFLKRRNIFNGNSVELKVGEGTWFVEVNYNQHLDYGCFTKVPKKPTPAANPIYYRLNVMADDSNASDAATQARDPASGGAIEAARDLASVNVVMPAVRSRSLFSFMRGNRKTN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02360 398 SMART B3_2 124 224 IPR003340 GO:0003677
Trre2g02360 398 CDD B3_DNA 122 222 IPR003340 GO:0003677
Trre2g02360 398 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 137 302 IPR039218 -
Trre2g02360 398 MobiDBLite consensus disorder prediction 51 70 - -
Trre2g02360 398 MobiDBLite consensus disorder prediction 1 70 - -
Trre2g02360 398 SUPERFAMILY DNA-binding pseudobarrel domain 119 220 IPR015300 -
Trre2g02360 398 ProSiteProfiles B3 DNA-binding domain profile. 125 224 IPR003340 GO:0003677
Trre2g02360 398 Gene3D - 103 225 IPR015300 -
Trre2g02360 398 Pfam B3 DNA binding domain 126 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02360 Trre-Chr2 19555329 19561727 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g02360 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02360 - - tpra:123903252 531.561