Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02339 ATGGATCTTCCAGAAACATCACTATGGTGGACTCAACAACAAAACCAACAACATCATCAACAACAACAAACTATGTTACTACTTGAACCAATTCAAAACAATAATTCTTGGTCTCTTCATCACCAACAACCCACATGGTTCAACCAAAACATGGAAGATGAAGAATTACATAACAACAACAACAACAACACCGCCACGACAACTGAAATAAAATCCGAAGACGAAAAAGAACCAATGTTCGAGAAACCATTGACACCATCTGACGTAGGTAAACTAAACCGTCTTGTTATTCCAAAACAATACGCTGAAAAATACTTCCCACTCGGCGGAGTCAGTGACTCTGCCGAGTGCAAAGGGTTGTTACTTAGTTTCGAAGATGAGTCAGGAAAGTGTTGGCGATTCCGATACTCGTATTGGAACAGTAGTCAAAGCTATGTTTTAACTAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGCGACGTCGTTTTGTTTGAACGACACCGTTTTGATAGTCAGAGACTTTTTATTAACTGGAGGAGGAGGTTGAATGGTGGTGATGAACAGTCGGCGTATGTTAGTAGAACGGTGGTGGGACATGGTGGTAATGGGGGTGGGAATAGTAAAAATGAGGTTGTTAATGGTTTGGGTGTTGGGTGGTCCAGAGGTTACTATTCTGCGCATGTTCCTTATCCTGCGCATCATCAGGTTTTGCCGTATCAACATGATCACTGTCTTCATGCAGGTAAAGGGTCCCAAAGTCAGAACCAAAGGACAAAACCAGTGGGAAATAGTTCTAGTTCAAGTTCTAGTTCTAGTTCAAGGGTACTTAGGTTGTTTGGTGTTAACATGGAATGCCAACCAGAACAACATGATTCTTCTACACCTCAATGTTCTTATGATAGTAATAATATGCCATTAACACAAACTACTTTAGATAATAGCCATAATCTCTACCAACCACCTAATTCTTCTCATTCTAATATGGTACGTCACCAACCATATTACTACTAG 1023 0.4027 MDLPETSLWWTQQQNQQHHQQQQTMLLLEPIQNNNSWSLHHQQPTWFNQNMEDEELHNNNNNNTATTTEIKSEDEKEPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGVSDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRFDSQRLFINWRRRLNGGDEQSAYVSRTVVGHGGNGGGNSKNEVVNGLGVGWSRGYYSAHVPYPAHHQVLPYQHDHCLHAGKGSQSQNQRTKPVGNSSSSSSSSSSRVLRLFGVNMECQPEQHDSSTPQCSYDSNNMPLTQTTLDNSHNLYQPPNSSHSNMVRHQPYYY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02339 340 SMART B3_2 80 186 IPR003340 GO:0003677
Trre2g02339 340 CDD B3_DNA 78 176 IPR003340 GO:0003677
Trre2g02339 340 Pfam B3 DNA binding domain 80 185 IPR003340 GO:0003677
Trre2g02339 340 MobiDBLite consensus disorder prediction 249 277 - -
Trre2g02339 340 Gene3D - 68 195 IPR015300 -
Trre2g02339 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 298 IPR044800 GO:0003700
Trre2g02339 340 ProSiteProfiles B3 DNA-binding domain profile. 80 186 IPR003340 GO:0003677
Trre2g02339 340 MobiDBLite consensus disorder prediction 290 340 - -
Trre2g02339 340 MobiDBLite consensus disorder prediction 55 84 - -
Trre2g02339 340 MobiDBLite consensus disorder prediction 251 277 - -
Trre2g02339 340 MobiDBLite consensus disorder prediction 290 334 - -
Trre2g02339 340 SUPERFAMILY DNA-binding pseudobarrel domain 75 185 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02339 Trre-Chr2 19395493 19398097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02339 73 295 RAV Transcription Factor Family AT5G06250 51.739 2.31e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g02339 B3 1.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02339 K09287 - gmx:100795470 381.719