Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02321 ATGGATAGTCATAGATGTCATGTATGTTTGTTTTGTGGCCTACGTTTTTCAAGAGTTCATGCCTTGAAAGGTCACATGAGAGTCCATAGAGAAGAGAAAAATAAGATCATGAGAGAAAGAATTGCTAACCTCAACCAACATGTGGGGAACCAAACACAAGTGACTTTCAATAGCCAACATGGGGTCTATATCCCACCCACAACGAGTCACTTCTATATGGGAGAATGGGGGAGGTCTATATCCCAACCACAACAAGTCATTTCCAATACAAGTCAAGGAAGAGAAGAATTAGATTTGGAACTAAGACTTGGTCCAAGTAAGGCTAATGAGTTGGACCTTGACCTCAAGCTATAA 354 0.4068 MDSHRCHVCLFCGLRFSRVHALKGHMRVHREEKNKIMRERIANLNQHVGNQTQVTFNSQHGVYIPPTTSHFYMGEWGRSISQPQQVISNTSQGREELDLELRLGPSKANELDLDLKL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02321 117 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Trre2g02321 117 SUPERFAMILY beta-beta-alpha zinc fingers 4 34 IPR036236 -
Trre2g02321 117 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Trre2g02321 117 SMART c2h2final6 7 29 IPR013087 -
Trre2g02321 117 Gene3D Classic Zinc Finger 2 62 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02321 5 106 C2H2 Transcription Factor Family AT3G09290 27.820 1.60e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02321 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02321 - K09228 gmx:102667172 54.299