Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02283 ATGAAAGATCCTGTTACTGCAATAACAGGTATAACATATGATAGAGACAGCATTGAACATTGGTTATTCAGAAACAAAAACATAACATGTCCTGTTACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCATACACTTCGTCGTTTGATTCAATCTTGGTGTACACAAAATGCTTCACTTGGTATTGATAGAATTCCAACACCAAAACCACCACTTACAAAAACCCATGTGAAATTCTTGAAGGTTAATGATGGTCGAAGCCGGCGTTGTTCGAGAATTAATAGAGATCGAATTAACCGCGGTTCAATTGCAGTGTTAACTGAGAGAATCTTGAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTTTCATTGATATCAAAATTTTCAGCTACAAAGAATGTTTTGGATGAGATGTTAAAAGTTGGAACAGTTTCAAAGCTTTTTGTTTTGTTACAAGCTGATCATGCTAAGTATTTGAAAGATAAAGTGATGCAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGTTTTCCTCAAACTTCTTTCTATGCTAGCTAA 585 0.3436 MKDPVTAITGITYDRDSIEHWLFRNKNITCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKTHVKFLKVNDGRSRRCSRINRDRINRGSIAVLTERILKVSMTVDDRAVFILSLISKFSATKNVLDEMLKVGTVSKLFVLLQADHAKYLKDKVMQIFKAHSEVWKNSPCFPQTSFYAS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02283 194 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Trre2g02283 194 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Trre2g02283 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Trre2g02283 194 PANTHER WDSAM1 PROTEIN 102 187 IPR045185 GO:0061630
Trre2g02283 194 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Trre2g02283 194 SUPERFAMILY RING/U-box 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02283 Trre-Chr2 18876561 18877727 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02283 1 83 U-box Gene Family AT2G35930 68.675 2.82e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02283 - - pvy:116142441 149.828