Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02281 ATGGCAACATACTTTCATAATAATACAGAAATTCAAGGTGGTTCTGCTGATGGTCTACAAACTCTCATATTCATGAACCCATCAGGCTACATCAATTACTCCGACACGCCGCAACCGCCGCCACATGCCGGAAACCTCGTATTTCTAAATTCAGCCTCCGCACTTGCCGGCAACGGCAACACTTCTCTCCAACAACAACAACAGAATCTATCTCACGCGCCACCACAATTTGTCGGGGTTCCGCTCTCGGCAGAACAATCAGTACAGGCCCATCACGACATATCCGCCTTGCATGGATTCCCACCGCGCATGCAGTACAATATGTGGAACGCTGCTGACCCAAATTCGGCGGCGCGTGAGGCCACACGCGCTACTCAGGGGCTGTCTTTAAGCTTACATGCACAAGGCTCGGGGGAGGATGGTCGGGTTACGGCTGGTGGGTCGTGTTCCTCTGCTTCCAACAACGGTGTTTCGGGAATTCAGAGTGTTTTGTTGAGTTCTAAGTATTTGAAGGCTACACAAGAGTTACTTGATGAGGTTGTTAATGTTAATGGTGGGATTAAGGTTGAGAGTGTTAAGAAAAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCTGTTAGTGGTGATGGTGGTTCTGTTGGTGGTGATGGAAGTGGAAAACGTAGCTCTGAATTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAGGCAAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGGTACAGACAATATCACAACCAGATGCAGATGGTGATATCTTCATTTGAACAAGTTGCAGGAATTGGGTCAGCAAGAACATACACTGCACTTGCATTACAAACAATTTCCAAGCAATTTAGGTGTTTAAAAGATGCAATTACTGGCCAAATTAGAGCTGCAAATAAAAGCTTAGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGACTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGTATGATGCATCATAATGCTTGGAGACCTCAACGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACACTTCCTTCACCCATATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGACTTTGGAAGCCAATGGTGGAAGAAATGTATGTGGAAGAGATGAAGGAGCAAGAGATGAATGGTTCCGAGGAAAACAAATCAAGCAAGAATACCGATGAAGACCCTTCAATGAAATCAACAACTCCACAACAAGTTCCGACCTCAGAAACAGAATCGAAAAGTTTCAATTCGAAACAAGACATTCCTATCGTTTCGGTTTCAACACAATCAACTTCACCAATTGGTGTGAATGTTAGAAACAATTCAGGATTTAACTTCACAGAACTTGATGGAATAACACAAGCAAGTCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCTCCAAATCATGTGAAATCTAATGAGACAAATAATAATAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAATCAAACTAATTTTATTGCCGGTTTCGGTCAATACCCGATGGAGGAAATCGGTAGATTTGATGCAGAACAATTTACACCAAGGTTTTCAGGTAACAACAATGGTGTTTCACTCACTCTTGGTTTACCTCATTGTGAAACATTATCAGGAACACATCAAAGTTTTATACCAAACCAAAACATTCAACTAGGAAGAAGATTGGATATTAGTGAACAAAATGAGTTAGGTGATTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGATTTGCTGCACAATTATTGCCAGATTTTGTGGCATAA 1956 0.4085 MATYFHNNTEIQGGSADGLQTLIFMNPSGYINYSDTPQPPPHAGNLVFLNSASALAGNGNTSLQQQQQNLSHAPPQFVGVPLSAEQSVQAHHDISALHGFPPRMQYNMWNAADPNSAAREATRATQGLSLSLHAQGSGEDGRVTAGGSCSSASNNGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVESVKKSFEKNKVVGESSTAVSGDGGSVGGDGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKEQEMNGSEENKSSKNTDEDPSMKSTTPQQVPTSETESKSFNSKQDIPIVSVSTQSTSPIGVNVRNNSGFNFTELDGITQASPKRTRNHEILQSPNHVKSNETNNNNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFTPRFSGNNNGVSLTLGLPHCETLSGTHQSFIPNQNIQLGRRLDISEQNELGDSSAAFESINMQNPKRFAAQLLPDFVA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02281 651 Coils Coil 233 260 - -
Trre2g02281 651 MobiDBLite consensus disorder prediction 204 234 - -
Trre2g02281 651 MobiDBLite consensus disorder prediction 439 465 - -
Trre2g02281 651 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Trre2g02281 651 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 434 - -
Trre2g02281 651 MobiDBLite consensus disorder prediction 510 533 - -
Trre2g02281 651 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Trre2g02281 651 MobiDBLite consensus disorder prediction 420 438 - -
Trre2g02281 651 MobiDBLite consensus disorder prediction 420 465 - -
Trre2g02281 651 MobiDBLite consensus disorder prediction 510 536 - -
Trre2g02281 651 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Trre2g02281 651 SMART HOX_1 349 413 IPR001356 GO:0003677
Trre2g02281 651 CDD homeodomain 349 410 IPR001356 GO:0003677
Trre2g02281 651 Pfam Associated with HOX 163 300 IPR006563 -
Trre2g02281 651 SMART prehox3 158 301 IPR006563 -
Trre2g02281 651 FunFam BEL1-like homeodomain protein 9 352 414 - -
Trre2g02281 651 Gene3D - 352 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02281 Trre-Chr2 18862436 18865863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02281 1 651 Homeobox Transcription Factor Family AT2G35940 51.928 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre2g02281 POX 1.6e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02281 - - gmx:100810851 934.48