Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02278 ATGGATCAAGAGAATGAAGTTTCAGAATATTTTCTATGTCCCATTTCATTACAACTCATGAAAGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGACAAAGCATTGAAAAATGGCTCTTTTCATCACAAAACAAAACATGTCCTGTCACTAAACAAACACTCACACATGATGATCATGATCTTATTATTCTCACACCAAATCACACTCTTCGCAGACTCATTCAAGCATGGTGCACCATTAACACTTCTCAAATAATTCCAACTCCAAAACCACCAACAACTAAGACACTTATAGAGAAACATCTCAAAGATGCTTCTGATTCTCCTCATTTGCTTATTCCATCCCTCATAAGCCTCAAAACAATTGCGTCCGAGAGCGAAACAAATCGAAGATGTATCGAATCGGCTGGCGCAGTTGAGTTCTTAGCTTCAATAGTAACAAAAAATAACACAAGTTCTTCATGTTCAAGTTCAACCACAGAATTTGAAATTGAATCTACCATTCTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAGAGTAGATGCAGAAGATGAAGCTATAAACATTCTTTACAATCTTCATTTAACAGAACAAAGTTTGATAACTCTCTTAAACTTCAAAAATGGAGAGTTTTTAGATTCTTTATTGAGATTACTCCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTATGACAAAAGTTGCTGATCCAACAAAACTAGCGAACCTAAAGACCGAGTTTTTCGTCGAATTAGTTCAGCTTCTGAAAGACCAGATATCAAAAAAAGCATCAAAAGCAACACTACAAACGTTAATTCAAGTCGTCGAATTCGGGAGAAATAGAGTAAAAGCAATTAAATCAGGGTGTGTTAATGTTCTGATAGAAGTTCTTCTTGATTGCAAAGAAAGAAAACCATGTGAGATGATATTGGTACTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAACTATTAAGCCATGGTTGTGGTTTAGCTATTGTTTCAAAGAAGATTCTAAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTGTTGTTGCTAAGCTATGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGAAAAAGCAAGAGAGATTCTTAAATTGCATGCAAAGTCTTGGAGGAGTTCTCAATGTATACCTTCTAATTTACTTGCTTCATACCCAACAAGTGGGTGA 1311 0.3547 MDQENEVSEYFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNKTCPVTKQTLTHDDHDLIILTPNHTLRRLIQAWCTINTSQIIPTPKPPTTKTLIEKHLKDASDSPHLLIPSLISLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSSCSSSTTEFEIESTILDDDDVEGFAFDFRVDAEDEAINILYNLHLTEQSLITLLNFKNGEFLDSLLRLLQKGNYDSRTYSVFLLKSMTKVADPTKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQVVEFGRNRVKAIKSGCVNVLIEVLLDCKERKPCEMILVLLEKLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLEVDSGNKAKEKAREILKLHAKSWRSSQCIPSNLLASYPTSG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02278 436 SUPERFAMILY RING/U-box 5 84 - -
Trre2g02278 436 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Trre2g02278 436 PANTHER WDSAM1 PROTEIN 5 425 IPR045185 GO:0061630
Trre2g02278 436 SUPERFAMILY ARM repeat 100 418 IPR016024 -
Trre2g02278 436 Gene3D - 91 424 IPR011989 -
Trre2g02278 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Trre2g02278 436 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Trre2g02278 436 CDD RING-Ubox_PUB 9 60 IPR045210 -
Trre2g02278 436 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02278 Trre-Chr2 18761369 18762679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02278 1 433 U-box Gene Family AT3G52450 50.909 2.02e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02278 - - tpra:123902305 743.421