Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02261 ATGCATCAGCTAAGCATATATCCATGGCTGCTGGTGCTACCATTGCTTCGTTCTCCATCTACCCAAAACTCGTTAACTTTTTCCTCTACTACCCATTCTTCCATTTCACTCATCACCCTAAACTTCCCACACACAAAAACCATTTCTCCAAAACCCCTCAATCCAAAACCCCAATTATTCAACTCTCTTCATTGTCTTCCTTCAATTTCCTTCAATGAGTTCCTGCTCACTCAACAAATAATAGAAGAAGAAGATGAAGACGATGAAGAAGACGAAGAAGTAGACGAAGAACAACCTAGGAGACTCTTTGTTGGAAACTTGCCATTTTCTTTGTCTTCTTCCCAATTGGCTGAACTTTTTCGAGAAGCTGGAAATGCTGTGTCTGTCGAGATTGTGTATGATGACATCGCGGGTAGAAGTAGAGGATTTGCATTTGTTACAATGGAGAGTGCGGAGGATGCTGAAGAAGCAATTCGAATGTTTGATGGCAATTTGAAGATGGAAGTGCACATAGAGACCAAAATGATAAGGACATGTTTGAATTGGCTTATTTAA 555 0.4036 MHQLSIYPWLLVLPLLRSPSTQNSLTFSSTTHSSISLITLNFPHTKTISPKPLNPKPQLFNSLHCLPSISFNEFLLTQQIIEEEDEDDEEDEEVDEEQPRRLFVGNLPFSLSSSQLAELFREAGNAVSVEIVYDDIAGRSRGFAFVTMESAEDAEEAIRMFDGNLKMEVHIETKMIRTCLNWLI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02261 184 SUPERFAMILY RNA-binding domain, RBD 92 171 IPR035979 GO:0003676
Trre2g02261 184 Gene3D - 72 178 IPR012677 -
Trre2g02261 184 PANTHER OS02G0815200 PROTEIN 82 164 - -
Trre2g02261 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 174 IPR000504 GO:0003723
Trre2g02261 184 SMART rrm1_1 101 170 IPR000504 GO:0003723
Trre2g02261 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02261 Trre-Chr2 18609909 18620629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02261 102 177 Eukaryotic Initiation Factors Gene Family AT2G23350 32.895 4.71e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02261 - - gmx:100789843 121.324