Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02260 ATGGCTATGCAACCTGTTTACCTTAAAGAACATGAAGGAATTGGTCATAATTCAGTTGGACAGTATTCATCTGTGAATTCATCAGCACCATGGTGGAGTAATAATGCCTTTGGATCTCAATCTGTTTATGGAGGAGAGTCTTGTGGTCAAATGAAACCATTTTCATTGGAACTTTCCAACTACATAGATCAACTTGCTCCTACTAAGCACTTGTCAAGAGGTGTTGAACAATTGTTTGATAAAGGACATCATACAACTAACCAATTTACCATTTTTCCAGATGACTGTAAGATGTCTCTTGATGCACAAAATCATCAGGCAACCTTATCACTGCAATCATCATTTTCTGCTGAGCCGCATAATCGTTTCGAGCTAGGGTTTAACCAACCTATGATCTGTGCAAAATATCCATATATGGATCAGTTTTACGGGCTGTTCTCGACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCGCTTAGCATGACATCTGATGATGGACCGACTTACGTGAATGCTAAGCAATACCATGGAATCATCAGGCGCAGGCAATCTCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGCCATATATGCACGAATCACGTCATCTACATGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAATTTCTACTGATGGAAGTGGAAAAACCGGGAGTGAGATGAACAAAAAAACCGGGGGCGGCCTACAACTGCAGTCCAGTGCTTCACAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTGAATTCGTTGAAGGAGACAAATGGAGGCAGTCCAAATGTCTCGGGATCGGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTGCTGTCAATCATATCAGATCTTCTGTCCACTCACTGGGAGACATGATCGATACTGAACACGGTATCGTCATGCCAACAAAATGGTTTGCAACAGCTGTCACTGGCAGACAGCTGTTGCAACCTTAA 1020 0.4304 MAMQPVYLKEHEGIGHNSVGQYSSVNSSAPWWSNNAFGSQSVYGGESCGQMKPFSLELSNYIDQLAPTKHLSRGVEQLFDKGHHTTNQFTIFPDDCKMSLDAQNHQATLSLQSSFSAEPHNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKISTDGSGKTGSEMNKKTGGGLQLQSSASQSSEVLQSEVGTLNSLKETNGGSPNVSGSEVTSMYSQGGLDSFAVNHIRSSVHSLGDMIDTEHGIVMPTKWFATAVTGRQLLQP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02260 339 Gene3D - 166 227 - -
Trre2g02260 339 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 223 IPR001289 GO:0003700|GO:0006355
Trre2g02260 339 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 85 291 IPR001289 GO:0003700|GO:0006355
Trre2g02260 339 MobiDBLite consensus disorder prediction 227 285 - -
Trre2g02260 339 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Trre2g02260 339 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Trre2g02260 339 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Trre2g02260 339 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02260 Trre-Chr2 18559855 18562443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02260 28 331 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.652 3.12e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre2g02260 CBFB_NFYA 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02260 K08064 - gmx:100808195 477.633