Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02259 ATGGCTATGCAACCTGTTTACCTTAAAGAACATGAAGGAATTGGTCATAATTCAGTTGGACAGTATTCATCTGTGAATTCATCAGCACCATGGTGGAGTAATAATGCCTTTGGATCTCAATCTGTTTATGGAGGAGAGTCTTGTGGTCAAATGAAACCATTTTCATTGGAACTTTCCAACTACATAGATCAACTTGCTCCTACTAAGCACTTGTCAAGAGGTGTTGAACAATTGTTTGATAAAGGACATCATACAACTAACCAATTTACCATTTTTCCAGAAATTTCTCTTCTAGATGACTGTAAGATGTCTCTTGATGCACAAAATCATCAGGCAACCTTATCACTGCAATCATCATTTTCTGCTGAGCCGCATAATCGTTTCGAGCTAGGGTTTAACCAACCTATGATCTGTGCAAAATATCCATATATGGATCAGTTTTACGGGCTGTTCTCGACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCGCTTAGCATGACATCTGATGATGGACCGACTTACGTGAATGCTAAGCAATACCATGGAATCATCAGGCGCAGGCAATCTCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGCCATATATGCACGAATCACGTCATCTACATGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAATTTCTACTGATGGAAGTGGAAAAACCGGGAGTGAGATGAACAAAAAAACCGGGGGCGGCCTACAACTGCAGTCCAGTGCTTCACAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTGAATTCGTTGAAGGAGACAAATGGAGGCAGTCCAAATGTCTCGGGATCGGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGATAGCTTTGCTGTCAATCATATCAGATCTTCTGTCCACTCACTGGGAGACATGATCGATACTGAACACGGTATCGTCATGCCAACAAAATGGTTTGCAACAGCTGTCACTGGCAGACAGCTGTTGCAACCTTAA 1035 0.428 MAMQPVYLKEHEGIGHNSVGQYSSVNSSAPWWSNNAFGSQSVYGGESCGQMKPFSLELSNYIDQLAPTKHLSRGVEQLFDKGHHTTNQFTIFPEISLLDDCKMSLDAQNHQATLSLQSSFSAEPHNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKISTDGSGKTGSEMNKKTGGGLQLQSSASQSSEVLQSEVGTLNSLKETNGGSPNVSGSEVTSMYSQGGLDSFAVNHIRSSVHSLGDMIDTEHGIVMPTKWFATAVTGRQLLQP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02259 344 MobiDBLite consensus disorder prediction 232 290 - -
Trre2g02259 344 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Trre2g02259 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700|GO:0006355
Trre2g02259 344 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Trre2g02259 344 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Trre2g02259 344 Gene3D - 171 232 - -
Trre2g02259 344 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Trre2g02259 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 88 296 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02259 Trre-Chr2 18559855 18562443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02259 28 336 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.399 8.96e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre2g02259 CBFB_NFYA 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02259 K08064 - gmx:100808195 484.567