Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02252 ATGAATAACACAGCTGATTCATCTGGATTCTTTGGTTCCAATGACATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGGATACTTTTACTCATCACAACAATCACACTCACATCATACTTTTGTACAAGATCACAAGTTCCAAATCCTCCTAGAAGAAGAAACAATAATAACACCCCACATGAATTTCTTGAGCCACAACATTCAATAATTGATTTGGGATTAGATGAAGAAACAATTATGAGTTATCCAAAGATGTTATATTCTGAAGTGAAGCTTAAGAAACATGATTCAACATCAACATGTTGTTCTATATGTTTAGGTGATTATAAAGGAAGTGATATGCTTAAGGTTTTACCAGATTGTGAACATTTGTTTCATCTTAAGTGTATTGAACCTTGGTTAAGGATGCATCCTACATGTCCTCTTTGTAGAACTTCTCCAATTCCAACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTGGCAACACGAAGAGATTAA 510 0.3451 MNNTADSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNPPRRRNNNNTPHEFLEPQHSIIDLGLDEETIMSYPKMLYSEVKLKKHDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIEPWLRMHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02252 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 150 IPR013083 -
Trre2g02252 169 SMART ring_2 104 145 IPR001841 -
Trre2g02252 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Trre2g02252 169 SUPERFAMILY RING/U-box 81 151 - -
Trre2g02252 169 CDD RING-H2_PA-TM-RING 103 146 - -
Trre2g02252 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 160 IPR045899 -
Trre2g02252 169 Pfam Ring finger domain 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02252 Trre-Chr2 18515346 18515855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02252 6 166 C3H Transcription Factor Family AT2G35910 61.728 6.65e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02252 - - gmx:100796149 249.98