Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02199 ATGGCTGAAGTCGCTGTTCAAGAACCTGTTGCAGTTGTTTCAGATCCTTCCCAGCTCGAAGTTAAACTCTTCAATCGCTGGAGCTTCGAAGACGTTCAGCTTTCTGATGTGTATCTGAGTGATTACATTGGAGTTGCGGCAACGAAACATGCGACATATGTTCCACACACTGCTGGAAGATACTCGAATAAGCGATTCAGGAAAGCAAATTGTCCCATTGTTGAGAGACTGACAAACTCACTCATGATGCACGGTAGAAACAATGGAAAGAAGCTTATGGCTGTTAAAATCATTAAGCACGCTATGGAAATTATTCATTTGTTAACTGACCAGAACCCAATTCAGGTTATCTGTGATGCTATTATCAACAGTGGTCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTGAGAAGACAGGCTGTGGATATCTCACCCCTTCGCCGTGTTAATCAAGCCATCTATCTTCTAACTACTGGCGCTCGTGAAGCTTCCTTTAGAAATATTAAGACAGTTGCTGAATGTTTGGCTGATGAGCTTATTAATGCAGCAAAAGGTTCATCCAACAGTTATGCGATCAAGAAGAAAGATGAAATTGAGAGAGTTGCCAAGGCAAATCGTTAA 630 0.4222 MAEVAVQEPVAVVSDPSQLEVKLFNRWSFEDVQLSDVYLSDYIGVAATKHATYVPHTAGRYSNKRFRKANCPIVERLTNSLMMHGRNNGKKLMAVKIIKHAMEIIHLLTDQNPIQVICDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREASFRNIKTVAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02199 209 CDD uS7_Eukaryote 22 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Trre2g02199 209 Pfam Ribosomal protein S7p/S5e 67 209 IPR023798 -
Trre2g02199 209 NCBIfam 30S ribosomal protein S7 20 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Trre2g02199 209 Gene3D Ribosomal protein S7 domain 3 209 IPR036823 -
Trre2g02199 209 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 209 IPR000235 GO:0006412
Trre2g02199 209 ProSitePatterns Ribosomal protein S7 signature. 75 101 IPR020606 GO:0003723|GO:0003735|GO:0006412
Trre2g02199 209 FunFam 40S ribosomal protein S5 4 209 - -
Trre2g02199 209 PANTHER RIBOSOMAL PROTEIN S7 19 209 IPR000235 GO:0006412
Trre2g02199 209 SUPERFAMILY Ribosomal protein S7 22 209 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02199 Trre-Chr2 17940108 17942813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02199 20 209 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.421 3.06e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02199 K02989 - gmx:100305898 357.066