Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02185 ATGAGGGGAAGAAGCTACAGTTACAGTCCATCTCCTCCAAGACGTTATGGCGGTCGAAGGGGACGCAGTCCTAGTCCTAGGGGACGTTACGGAGGAGGCCGTTATAGAGGCCGTGATAGTGATTTGCCAACAAGTCTCCTTGTCCGGAACCTTCACAAAGATTGCAGGCCGGAAGATCTGCATGATCCATTTGGCCAGTTTGGTCCTGTCAAGGATATTTACCTGCCTCGTGATTATTATACTGGGGAGCCAAGGGGATTTGGGTTTGTTCAATTTGTGGACCCGGCAGATGCTGCAGATGCAAAACATCACATGGACGGTCAAGTTCTTCTTGGCCGAGAGTTAACTGTGGTGTTTGCTGAAGAAAATAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGAAGATCTCCACGCCGTCGTTCTCGTTCACCACGCTATGCAAGAACCTATTCTCCTAGTCCAGACTATTCACCTTCTCCAAGACAAAGGCGATATTCCAGATACTCCAGGTCAATCTCACCAAGGGACACAAGGTATAGGAGGGGATCATACTCTAGGTCCCCTTATAGTAGATCACCTTATGCATCAAGAAGCCCAAGTCGAGGGAGGAGTTACAGCAGGAGCCCTAGTCCTGGGTACTCCAGGTGA 672 0.4881 MRGRSYSYSPSPPRRYGGRRGRSPSPRGRYGGGRYRGRDSDLPTSLLVRNLHKDCRPEDLHDPFGQFGPVKDIYLPRDYYTGEPRGFGFVQFVDPADAADAKHHMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSPSPDYSPSPRQRRYSRYSRSISPRDTRYRRGSYSRSPYSRSPYASRSPSRGRSYSRSPSPGYSR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02185 223 MobiDBLite consensus disorder prediction 122 141 - -
Trre2g02185 223 SUPERFAMILY RNA-binding domain, RBD 44 150 IPR035979 GO:0003676
Trre2g02185 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Trre2g02185 223 Gene3D - 38 159 IPR012677 -
Trre2g02185 223 MobiDBLite consensus disorder prediction 122 223 - -
Trre2g02185 223 MobiDBLite consensus disorder prediction 154 175 - -
Trre2g02185 223 MobiDBLite consensus disorder prediction 1 41 - -
Trre2g02185 223 MobiDBLite consensus disorder prediction 191 223 - -
Trre2g02185 223 SMART rrm1_1 45 118 IPR000504 GO:0003723
Trre2g02185 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 115 IPR000504 GO:0003723
Trre2g02185 223 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02185 Trre-Chr2 17837498 17839539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02185 45 107 Eukaryotic Initiation Factors Gene Family AT3G11400 44.444 6.57e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02185 K12900 - gmx:100816913 196.823